Schema for sgdBlastTab
  Database: sacCer1    Primary Table: sgdBlastTab    Row Count: 52,725   Data last updated: 2003-12-31
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query YAL001Cvarchar(255) values Name of sequence in this assembly (query)
target YAL001Cvarchar(255) values Name of sequence in other assembly (target)
identity 100float range Percent identity
aliLength 1160int(10) unsigned range Length of alignment
mismatch 0int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 1160int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 1160int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 2181.8double range Bit score

Connected Tables and Joining Fields
        sacCer1.choExpDistance.query (via sgdBlastTab.query)
      sacCer1.choExpDistance.target (via sgdBlastTab.query)
      sacCer1.dmBlastTab.query (via sgdBlastTab.query)
      sacCer1.esRegGeneToModule.gene (via sgdBlastTab.query)
      sacCer1.esRegGeneToMotif.gene (via sgdBlastTab.query)
      sacCer1.esRegUpstreamRegion.name (via sgdBlastTab.query)
      sacCer1.hgBlastTab.query (via sgdBlastTab.query)
      sacCer1.mmBlastTab.query (via sgdBlastTab.query)
      sacCer1.rnBlastTab.query (via sgdBlastTab.query)
      sacCer1.sgdAbundance.name (via sgdBlastTab.query)
      sacCer1.sgdCanonical.transcript (via sgdBlastTab.query)
      sacCer1.sgdDescription.name (via sgdBlastTab.query)
      sacCer1.sgdGene.name (via sgdBlastTab.query)
      sacCer1.sgdIsoforms.transcript (via sgdBlastTab.query)
      sacCer1.sgdLocalization.name (via sgdBlastTab.query)
      sacCer1.sgdPep.name (via sgdBlastTab.query)
      sacCer1.sgdToName.name (via sgdBlastTab.query)
      sacCer1.sgdToPfam.name (via sgdBlastTab.query)
      sacCer1.sgdToSwissProt.name (via sgdBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
YAL001CYAL001C100116000011600116002181.8
YAL001CYMR192W22.921921226992765227030.0002543.13
YAL002WYAL002W100117600011760117602271.5
YAL002WYIL149C20.25479299176441091106014880.00002946.21
YAL003WYAL003W10020600020602062.9e-82298.9
YAL005CYAL005C100642000642064201109.4
YAL005CYLL024C97.696071400607060701087.4
YAL005CYER103W83.096091002060606090934.1
YAL005CYBL075C81.446091102060606090931.8
YAL005CYJL034W64.2460421234606526540730.3

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.