Schema for sgdPep
  Database: sacCer1    Primary Table: sgdPep    Row Count: 5,766   Data last updated: 2003-12-31
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name YAL001Cvarchar(255) values Name of gene
seq MVLTIYPDELVQIVSDKIASNKGKITL...longblob   mRNA sequence

Connected Tables and Joining Fields
        sacCer1.choExpDistance.query (via sgdPep.name)
      sacCer1.choExpDistance.target (via sgdPep.name)
      sacCer1.dmBlastTab.query (via sgdPep.name)
      sacCer1.esRegGeneToModule.gene (via sgdPep.name)
      sacCer1.esRegGeneToMotif.gene (via sgdPep.name)
      sacCer1.esRegUpstreamRegion.name (via sgdPep.name)
      sacCer1.hgBlastTab.query (via sgdPep.name)
      sacCer1.mmBlastTab.query (via sgdPep.name)
      sacCer1.rnBlastTab.query (via sgdPep.name)
      sacCer1.sgdAbundance.name (via sgdPep.name)
      sacCer1.sgdBlastTab.query (via sgdPep.name)
      sacCer1.sgdBlastTab.target (via sgdPep.name)
      sacCer1.sgdCanonical.transcript (via sgdPep.name)
      sacCer1.sgdDescription.name (via sgdPep.name)
      sacCer1.sgdGene.name (via sgdPep.name)
      sacCer1.sgdIsoforms.transcript (via sgdPep.name)
      sacCer1.sgdLocalization.name (via sgdPep.name)
      sacCer1.sgdToName.name (via sgdPep.name)
      sacCer1.sgdToPfam.name (via sgdPep.name)
      sacCer1.sgdToSwissProt.name (via sgdPep.name)

Sample Rows
 
nameseq
YAL001CMVLTIYPDELVQIVSDKIASNKGKITLNQLWDISGKYFDLSDKKVKQFVLSCVILKKDIEVYCDGAITTKNVTDIIGDANHSYSVGITEDSLWTLLTGYTKKESTIGNSAFELLLEVAKSGEKGINTM ...
YAL002WMGTSKGCVLIFNYNEHLQTILVPTLSEDPSIHSIRSPVKSIVICSDGTHVAASYETGNICIWNLNVGYRVKPTSEPTNGMTPTPALPAVLHIDDHVNKEITGLDFFGARHTALIVSDRTGKVSLYNGY ...
YAL003WMASTDFSKIETLKQLNASLADKSYIEGTAVSQADVTVFKAFQSAYPEFSRWFNHIASKADEFDSFPAASAAAAEEEEDDDVDLFGSDDEEADAEAEKLKAERIAAYNAKKAAKPAKPAAKSIVTLDVK ...
YAL005CMSKAVGIDLGTTYSCVAHFANDRVDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQAAMNPSNTVFDAKRLIGRNFNDPEVQADMKHFPFKLIDVDGKPQIQVEFKGETKNFTPEQISSMVLGKMKET ...
YAL007CMIKSTIALPSFFIVLILALVNSVAASSSYAPVAISLPAFSKECLYYDMVTEDDSLAVGYQVLTGGNFEIDFDITAPDGSVITSEKQKKYSDFLLKSFGVGKYTFCFSNNYGTALKKVEITLEKEKTLT ...
YAL008WMTLAFNMQRLVFRNLNVGKRMFKNVPLWRFNVANKLGKPLTRSVGLGGAGIVAGGFYLMNRQPSKLIFNDSLGAAVKQQGPLEPTVGNSTAITEERRNKISSHKQMFLGSLFGVVLGVTVAKISILFM ...
YAL009WMEPESIGDVGNHAQDDSASIVSGPRRRSTSKTSSAKNIRNSSNISPASMIFRNLLILEDDLRRQAHEQKILKWQFTLFLASMAGVGAFTFYELYFTSDYVKGLHRVILQFTLSFISITVVLFHISGQY ...
YAL010CMLPYMDQVLRAFYQSTHWSTQNSYEDITATSRTLLDFRIPSAIHLQISNKSTPNTFNSLDFSTRSRINGSLSYLYSDAQQLEKFMRNSTDIPLQDATETYRQLQPNLNFSVSSANTLSSDNTTVDNDK ...
YAL011WMPAVLRTRSKESSIEQKPASRTRTRSRRGKRGRDDDDDDDDEESDDAYDEVGNDYDEYASRAKLATNRPFEIVAGLPASVELPNYNSSLTHPQSIKNSGVLYDSLVSSRRTWVQGEMFELYWRRPKKI ...
YAL012WMTLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.