Schema for rnBlastTab
  Database: sacCer2    Primary Table: rnBlastTab    Row Count: 1,273   Data last updated: 2010-08-18
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query YMR314Wvarchar(255) values Name of sequence in this assembly (query)
target NM_017278varchar(255) values Name of sequence in other assembly (target)
identity 53.19float range Percent identity
aliLength 235int(10) unsigned range Length of alignment
mismatch 107int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 234int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 233int(10) unsigned range End in target (non-inclusive)
eValue 3e-65double range Expectation value
bitScore 243double range Bit score

Connected Tables and Joining Fields
        sacCer2.ceBlastTab.query (via rnBlastTab.query)
      sacCer2.choExpDistance.query (via rnBlastTab.query)
      sacCer2.choExpDistance.target (via rnBlastTab.query)
      sacCer2.dmBlastTab.query (via rnBlastTab.query)
      sacCer2.drBlastTab.query (via rnBlastTab.query)
      sacCer2.esRegGeneToModule.gene (via rnBlastTab.query)
      sacCer2.esRegGeneToMotif.gene (via rnBlastTab.query)
      sacCer2.esRegUpstreamRegion.name (via rnBlastTab.query)
      sacCer2.hgBlastTab.query (via rnBlastTab.query)
      sacCer2.mmBlastTab.query (via rnBlastTab.query)
      sacCer2.sgdAbundance.name (via rnBlastTab.query)
      sacCer2.sgdBlastTab.query (via rnBlastTab.query)
      sacCer2.sgdBlastTab.target (via rnBlastTab.query)
      sacCer2.sgdCanonical.transcript (via rnBlastTab.query)
      sacCer2.sgdDescription.name (via rnBlastTab.query)
      sacCer2.sgdGene.name (via rnBlastTab.query)
      sacCer2.sgdIsoforms.transcript (via rnBlastTab.query)
      sacCer2.sgdLocalization.name (via rnBlastTab.query)
      sacCer2.sgdPep.name (via rnBlastTab.query)
      sacCer2.sgdToName.name (via rnBlastTab.query)
      sacCer2.sgdToPfam.name (via rnBlastTab.query)
      sacCer2.sgdToSwissProt.name (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
YMR314WNM_01727853.192351072023402333e-65243
YMR311CNM_13882327.911729183820101480.000340.4
YMR304WNM_19878527.63662289194541784262e-31133
YMR293CNM_00101403433.33432256643457674855e-55210
YMR288WBC08992543.66713829029713740.0000000000565.5
YMR301CNM_08058239.716123478736752268262e-117418
YMR300CBC08699933.14507297131485114992e-61231
YMR290CNM_00100699664.564431561484911896319e-162565
YMR284WBC07871821.925113501718518224951e-1683.6
YMR281WBC07402030.33244132858301442513e-22100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.