Schema for sgdBlastTab
  Database: sacCer2    Primary Table: sgdBlastTab    Row Count: 42,357   Data last updated: 2010-08-12
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query YAL068W-Avarchar(255) values Name of sequence in this assembly (query)
target YAL068W-Avarchar(255) values Name of sequence in other assembly (target)
identity 100float range Percent identity
aliLength 84int(10) unsigned range Length of alignment
mismatch 0int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 84int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 84int(10) unsigned range End in target (non-inclusive)
eValue 3e-49double range Expectation value
bitScore 187double range Bit score

Connected Tables and Joining Fields
        sacCer2.ceBlastTab.query (via sgdBlastTab.query)
      sacCer2.choExpDistance.query (via sgdBlastTab.query)
      sacCer2.choExpDistance.target (via sgdBlastTab.query)
      sacCer2.dmBlastTab.query (via sgdBlastTab.query)
      sacCer2.drBlastTab.query (via sgdBlastTab.query)
      sacCer2.esRegGeneToModule.gene (via sgdBlastTab.query)
      sacCer2.esRegGeneToMotif.gene (via sgdBlastTab.query)
      sacCer2.esRegUpstreamRegion.name (via sgdBlastTab.query)
      sacCer2.hgBlastTab.query (via sgdBlastTab.query)
      sacCer2.mmBlastTab.query (via sgdBlastTab.query)
      sacCer2.rnBlastTab.query (via sgdBlastTab.query)
      sacCer2.sgdAbundance.name (via sgdBlastTab.query)
      sacCer2.sgdCanonical.transcript (via sgdBlastTab.query)
      sacCer2.sgdDescription.name (via sgdBlastTab.query)
      sacCer2.sgdGene.name (via sgdBlastTab.query)
      sacCer2.sgdIsoforms.transcript (via sgdBlastTab.query)
      sacCer2.sgdLocalization.name (via sgdBlastTab.query)
      sacCer2.sgdPep.name (via sgdBlastTab.query)
      sacCer2.sgdToName.name (via sgdBlastTab.query)
      sacCer2.sgdToPfam.name (via sgdBlastTab.query)
      sacCer2.sgdToSwissProt.name (via sgdBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
YAL068W-AYAL068W-A10084000840843e-49187
YAL068W-AYJR162C88.184100084321169.999999999999999e-43165
YAL068W-AYDR543C89.29849008415999.999999999999999e-43165
YAL068W-AYER188C-A86.98411008415992.9999999999999996e-42164
YAL068W-AYNL337W86.9841100840845e-42163
YAL068W-AYFL063W84.5284130084671511e-40158
YAL068W-AYLL065W85.1981120081321133e-39154
YAL068W-AYNR077C85.19811200810814.0000000000000004e-39153
YAL068W-AYKL225W77.3884190084311158.999999999999999e-36142
YAL068W-AYMR326C68.75802410800793e-27114

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.