Schema for xenoMrna
  Database: saiBol1    Primary Table: xenoMrna    Row Count: 9,954,856   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1112int(10) unsigned Number of bases that match that aren't repeats
misMatches 128int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 10int(10) unsigned Number of inserts in query
qBaseInsert 1014int(10) unsigned Number of bases inserted in query
tNumInsert 6int(10) unsigned Number of inserts in target
tBaseInsert 143int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JO409974varchar(255) Query sequence name
qSize 2499int(10) unsigned Query sequence size
qStart 166int(10) unsigned Alignment start position in query
qEnd 2420int(10) unsigned Alignment end position in query
tName AGCE01148336varchar(255) Target sequence name
tSize 38010int(10) unsigned Target sequence size
tStart 8739int(10) unsigned Alignment start position in target
tEnd 10122int(10) unsigned Alignment end position in target
blockCount 13int(10) unsigned Number of blocks in alignment
blockSizes 204,14,31,214,178,224,148,5...longblob Size of each block
qStarts 166,370,448,488,702,881,110...longblob Start of each block in query.
tStarts 8739,8973,9051,9082,9297,94...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      saiBol1.all_mrna.qName (via xenoMrna.qName)
      saiBol1.xenoRefFlat.name (via xenoMrna.qName)
      saiBol1.xenoRefGene.name (via xenoMrna.qName)
      saiBol1.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851112128001010146143++JO40997424991662420AGCE011483363801087391012213204,14,31,214,178,224,148,52,51,13,31,47,33,166,370,448,488,702,881,1108,2125,2183,2242,2262,2318,2387,8739,8973,9051,9082,9297,9475,9699,9847,9899,9954,9967,10016,10089,
5851112128001010146143++KA3158962426242278AGCE011483363801087391012213204,14,31,214,178,224,148,52,51,13,31,47,33,24,228,306,346,560,739,966,1983,2041,2100,2120,2176,2245,8739,8973,9051,9082,9297,9475,9699,9847,9899,9954,9967,10016,10089,
585198429700271936291354++U469154471224239AGCE011483363801087391237437204,29,36,211,178,220,150,53,45,31,118,81,19,39,15,27,17,7,14,60,12,7,10,5,39,11,7,14,18,24,75,42,101,95,156,60,51,22,226,304,349,560,739,962,1995,2055,2127,2166,2284,2365,2429,2476,2491,2518,2549,2556,2575,2685,2698,2755,2765,2987,3034,3050,3 ...8739,8973,9051,9087,9299,9477,9697,9847,9906,9967,10001,10120,10204,10268,10312,10328,10357,10374,10397,10415,10526,10538,10605, ...
5859098900455473++U24153201901053AGCE0114833638010875198227192,29,42,216,181,213,125,0,192,259,310,526,712,928,8751,8973,9040,9082,9299,9484,9697,
6801172420224783192++BC008341427914212735JH378169129237631255317212554600796,74,138,362,375,45,146,1421,1520,1596,1735,2169,2544,2589,12553172,12553268,12553342,12553480,12553914,12554290,12554454,
6801034104003757216+-BC0908422250421255JH3781691292376312553201125545559102,42,373,95,257,130,105,17,17,42,144,186,626,721,984,1116,1221,1238,369208,369429,369472,369921,370019,370290,370420,370527,370545,
585121317600182505161773++BC08665041351814075AGCE011483363801087641192622179,11,31,218,179,211,152,22,88,12,15,8,24,30,5,11,9,19,51,33,66,15,181,360,438,478,696,882,1096,2340,2366,2497,2615,2652,2665,2745,2796,2801,2813,2832,3086,3848,3990,4060,8764,8973,9051,9082,9301,9486,9697,10067,10098,10186,10346,10403,10415,10512,10571,10578,10589,10610,10861,11702,11845,11911,
585145219400212266271516++JI8886153941133925AGCE011483363801087641192631179,11,42,217,180,211,150,34,29,52,7,5,54,74,11,5,7,24,9,78,16,17,9,8,15,11,32,33,75,36,15,13,192,259,310,527,714,928,1941,2069,2110,2190,2197,2202,2256,2474,2485,2490,2503,2532,2888,3170,3186,3211,3301,3317,3641,3652,3 ...8764,8973,9040,9082,9300,9486,9697,9847,9967,10001,10082,10091,10100,10155,10273,10390,10403,10415,10451,10843,11123,11140,11185 ...
585145219400212266271516++JP0426993941133925AGCE011483363801087641192631179,11,42,217,180,211,150,34,29,52,7,5,54,74,11,5,7,24,9,78,16,17,9,8,15,11,32,33,75,36,15,13,192,259,310,527,714,928,1941,2069,2110,2190,2197,2202,2256,2474,2485,2490,2503,2532,2888,3170,3186,3211,3301,3317,3641,3652,3 ...8764,8973,9040,9082,9300,9486,9697,9847,9967,10001,10082,10091,10100,10155,10273,10390,10403,10415,10451,10843,11123,11140,11185 ...
58524952480022117816322++JV63728541392184139AGCE011483363801087681183328173,42,216,176,222,152,36,115,232,99,36,118,54,23,5,75,23,18,11,19,7,39,59,88,30,11,102,562,218,460,511,727,904,1129,2170,2206,2328,2562,2662,2703,2821,2875,2899,2905,2991,3097,3134,3146,3165,3174,3215,3332,3422,3453,346 ...8768,9040,9082,9299,9475,9697,9849,9886,10001,10233,10332,10374,10493,10552,10584,10589,10674,10799,10822,10833,10855,10866,1090 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.