Schema for xenoRefFlat
  Database: saiBol1    Primary Table: xenoRefFlat    Row Count: 593,440   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName KAT7varchar(255) Name of gene as it appears in genome browser.
name NM_001199156varchar(255) Name of gene
chrom JH378112varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 23356739int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 23356820int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 23356820int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 23356820int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 23356739,longblob Exon start positions (or end positions for minus strand item)
exonEnds 23356820,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      saiBol1.xenoMrna.qName (via xenoRefFlat.name)
      saiBol1.xenoRefGene.name (via xenoRefFlat.name)
      saiBol1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
KAT7NM_001199156JH378112-23356739233568202335682023356820123356739,23356820,
KAT7NM_001199156JH378106+65992832662315876623158766231587365992832,66231476,66231542,65992881,66231500,66231587,
KAT7NM_001199156JH378334+1211674289864289864289863121167,428898,428944,121200,428931,428986,
KAT7NM_001199156JH378170+482777851162505116250511625024827778,5116200,4827814,5116250,
KAT7NM_001199156JH378151+684049469581796958179695817936840494,6854685,6958134,6840537,6854716,6958179,
KAT7NM_001199156JH378126+111415614583861458386145838621114156,1458333,1114185,1458386,
KAT7NM_001199156JH378119+32169739323462963234629632346296332169739,32171671,32346257,32169781,32171691,32346296,
KAT7NM_001199156JH378326+1931476098316098316098313193147,608786,609792,193210,608811,609831,
CG13364NM_144243JH378173-12563679125638741256367912563874112563679,12563874,
MGAT4CNM_001351284JH378162-576548061001206100120610012035765480,6100044,6100108,5765548,6100059,6100120,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.