Schema for xenoRefFlat
  Database: ailMel1    Primary Table: xenoRefFlat    Row Count: 402,766   Data last updated: 2020-08-17
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName anxa4varchar(255) values Name of gene as it appears in genome browser.
name NM_001104824varchar(255) values Name of gene
chrom GL192342.1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 4631898int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 4634517int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 4631898int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 4634517int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 4631898,4634418,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 4632021,4634517,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ailMel1.xenoMrna.qName (via xenoRefFlat.name)
      ailMel1.xenoRefGene.name (via xenoRefFlat.name)
      ailMel1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
anxa4NM_001104824GL192342.1-463189846345174631898463451724631898,4634418,4632021,4634517,
anxa4NM_001104824GL192406.1-279701228108372797012281083762797012,2798109,2801827,2808426,2809857,2810723,2797135,2798169,2801908,2808501,2809905,2810837,
anxa4NM_001104824GL192914.1+8185808206588185808206584818580,818729,818836,820607,818637,818732,818944,820658,
ythdc1.LNM_001094824GL194198.1+18450420947218450420947218184504,185513,185537,185750,190532,191089,191702,193494,193685,199921,200996,203668,204983,205108,205253,205334,207011,209397,184606,185526,185561,185853,190622,191148,191792,193603,193803,200006,201163,203753,205012,205148,205316,205337,207143,209472,
MOKNM_001353827GL192632.1+1656770170630016569641705686111656770,1676312,1687280,1697845,1698050,1700066,1701826,1702939,1703640,1705503,1706279,1656972,1676425,1687351,1697924,1698099,1700242,1701928,1703115,1703746,1705686,1706300,
ZNF334NM_001353826GL192700.1-7209997213687209997213682720999,721197,721173,721368,
ZNF334NM_001353826GL192891.1+3649115668936491156689536491,88220,104414,150879,156539,36614,88229,104462,150894,156689,
ZNF334NM_001353826GL192891.1+1840865461141840865461142184086,546015,184179,546114,
ZNF334NM_001353826GL193184.1-2760936486027609364860227609,364761,27687,364860,
ZNF334NM_001353826GL193184.1+2433912729462433912729463243391,270079,272889,243517,270094,272946,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.