Schema for estOrientInfo
  Database: allMis1    Primary Table: estOrientInfo    Row Count: 5,917   Data last updated: 2016-06-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AKHW01057462varchar(255) values Reference sequence chromosome or scaffold
chromStart 6931int(10) unsigned range Start position in chromosome
chromEnd 7039int(10) unsigned range End position in chromosome
name ES318643varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 29smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 50smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        allMis1.all_est.qName (via estOrientInfo.name)
      allMis1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AKHW0105746269317039ES3186430290500
585AKHW010134153321100ES3178162430650
585AKHW0101458101628ES31901920000
585AKHW010247065241659ES31928010000
585AKHW010247065241688ES32170310000
585AKHW010247065241776ES31959310000
585AKHW010247065241994ES31826210000
585AKHW010247065242017ES321371125000
585AKHW010247065272017ES321050118000
585AKHW0102470617022017ES318590061000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.