Schema for intronEst
  Database: allMis1    Primary Table: intronEst    Row Count: 2,871   Data last updated: 2016-06-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 220int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 548int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName ES317816varchar(255) values Query sequence name
qSize 606int(10) unsigned range Query sequence size
qStart 8int(10) unsigned range Alignment start position in query
qEnd 228int(10) unsigned range Alignment end position in query
tName AKHW01013415varchar(255) values Target sequence name
tSize 1163int(10) unsigned range Target sequence size
tStart 332int(10) unsigned range Alignment start position in target
tEnd 1100int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 87,118,15,longblob   Size of each block
qStarts 378,465,583,longblob   Start of each block in query.
tStarts 332,792,1085,longblob   Start of each block in target.

Connected Tables and Joining Fields
        allMis1.all_est.qName (via intronEst.qName)
      allMis1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585220000002548-ES3178166068228AKHW0101341511633321100387,118,15,378,465,583,332,792,1085,
58534510240021258+ES319019677168538AKHW010145811831016283127,112,131,168,295,407,0,1182,1497,
585780000011057+ES319280435357435AKHW0102470633325241659243,35,357,400,524,1624,
5851070000011057+ES321703539432539AKHW0102470633325241688243,64,432,475,524,1624,
5851950000011057+ES319593591396591AKHW0102470633325241776243,152,396,439,524,1624,
5854130000011057+ES318262611198611AKHW0102470633325241994243,370,198,241,524,1624,
5854360000011057+ES32137156099535AKHW0102470633325242017243,393,99,142,524,1624,
5854330000011057+ES3210504587440AKHW0102470633325272017240,393,7,47,527,1624,
585211001002965+ES32149459020232AKHW01033322149201177323,133,56,20,43,176,0,638,1121,
585152001001350+ES321785667514667AKHW01033322149263611392135,18,514,649,636,1121,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.