Schema for estOrientInfo
  Database: bosTau7    Primary Table: estOrientInfo    Row Count: 1,809,740   Data last updated: 2016-06-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 754smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr11varchar(255) Reference sequence chromosome or scaffold
chromStart 22223225int(10) unsigned Start position in chromosome
chromEnd 22223809int(10) unsigned End position in chromosome
name AA908029varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 6smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        bosTau7.all_est.qName (via estOrientInfo.name)
      bosTau7.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
754chr112222322522223809AA90802900600
754chr112222448422224897AA90802800100
755chr112238063122381095AA90802500000
886chr113947947239481022AA961327-2016042
886chr113947947339481019AA9613282190430
959chr114907523549080207AA90802610000
1275chr119056317290563768AA9080190320044
841chr133362602833626453AA9613310017041
841chr133362602933626764AA9613290118041
841chr133362615533626453AA96133000000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.