Schema for intronEst
  Database: bosTau7    Primary Table: intronEst    Row Count: 931,396   Data last updated: 2016-06-11
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 886smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 429int(10) unsigned Number of bases that match that aren't repeats
misMatches 0int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 1int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 1int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 1120int(10) unsigned Number of bases inserted in target
strand -char(2) + or - for strand. First character query, second target (optional)
qName AA961327varchar(255) Query sequence name
qSize 453int(10) unsigned Query sequence size
qStart 16int(10) unsigned Alignment start position in query
qEnd 447int(10) unsigned Alignment end position in query
tName chr11varchar(255) Target sequence name
tSize 109987751int(10) unsigned Target sequence size
tStart 39479472int(10) unsigned Alignment start position in target
tEnd 39481022int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 21,4,84,132,189,longblob Size of each block
qStarts 6,28,32,116,248,longblob Start of each block in query.
tStarts 39479472,39479493,39479847,...longblob Start of each block in target.

Connected Tables and Joining Fields
        bosTau7.all_est.qName (via intronEst.qName)
      bosTau7.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
8864290011131120-AA96132745316447chr111099877513947947239481022521,4,84,132,189,6,28,32,116,248,39479472,39479493,39479847,39480305,39480833,
8864250003641121+AA9613284510431chr111099877513947947339481019723,86,132,137,8,12,27,0,23,109,241,382,391,404,39479473,39479845,39480305,39480833,39480972,39480980,39480992,
959475601047124481+AA90802653032530chr1110998775149075235490802071438,251,88,4,33,3,16,4,11,5,6,11,8,13,32,70,321,410,414,447,450,466,470,481,490,497,508,517,49075235,49079735,49079987,49080075,49080080,49080114,49080118,49080135,49080140,49080152,49080162,49080170,49080182,49080194,
761454003003772-AA9080224603460chr148121634923133881231351104195,74,100,88,0,195,269,369,23133881,23134405,23134738,23135022,
761377307223772-AA90801140920409chr14812163492313395123135110656,69,74,100,36,52,0,57,126,200,300,337,23133951,23134007,23134405,23134738,23135022,23135058,
965454207002506-AA90800948017480chr19648453204985097849851947367,72,324,0,67,139,49850978,49851292,49851623,
7572940060022167+AA96132557517317chr216907842222665730226681973127,66,107,17,144,210,22665730,22667139,22668090,
7572950030022167-AA96132650110308chr216907842222665732226681973125,66,107,193,318,384,22665732,22667139,22668090,
6596154040051424+AA9080156658631chr235233401597160679718114671,81,149,173,92,57,8,79,160,309,482,574,9716067,9716225,9716662,9717486,9717964,9718057,
6594652011241119+AA9080124740470chr235233401597160689717655570,81,149,140,28,0,70,151,300,442,9716068,9716225,9716662,9717486,9717627,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.