Schema for xenoMrna
  Database: canFam6    Primary Table: xenoMrna    Row Count: 4,811,217   Data last updated: 2021-05-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 612int(10) unsigned Number of bases that match that aren't repeats
misMatches 61int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 250int(10) unsigned Number of bases inserted in query
tNumInsert 7int(10) unsigned Number of inserts in target
tBaseInsert 255int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName KA461050varchar(255) Query sequence name
qSize 961int(10) unsigned Query sequence size
qStart 9int(10) unsigned Alignment start position in query
qEnd 932int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 122014068int(10) unsigned Target sequence size
tStart 29345int(10) unsigned Alignment start position in target
tEnd 30273int(10) unsigned Alignment end position in target
blockCount 9int(10) unsigned Number of blocks in alignment
blockSizes 36,18,108,30,56,182,76,59,108,longblob Size of each block
qStarts 9,45,98,272,451,507,689,765...longblob Start of each block in query.
tStarts 29345,29417,29469,29577,296...longblob Start of each block in target.

Connected Tables and Joining Fields
        canFam6.all_est.qName (via xenoMrna.qName)
      canFam6.all_mrna.qName (via xenoMrna.qName)
      canFam6.refGene.name (via xenoMrna.qName)
      canFam6.refSeqAli.qName (via xenoMrna.qName)
      canFam6.xenoRefFlat.name (via xenoMrna.qName)
      canFam6.xenoRefGene.name (via xenoMrna.qName)
      canFam6.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585612610032507255++KA4610509619932chr11220140682934530273936,18,108,30,56,182,76,59,108,9,45,98,272,451,507,689,765,824,29345,29417,29469,29577,29690,29747,29963,30072,30165,
5858549100618110411++KA487441120421128chr112201406829351307071228,20,76,28,69,183,74,59,109,127,130,42,2,30,50,157,217,286,469,544,603,747,875,1086,29351,29414,29467,29579,29677,29747,29965,30072,30164,30307,30434,30665,
5858909500515810371++KA511079117901143chr112201406829351307071238,21,80,33,69,187,81,63,114,127,130,42,0,38,66,146,247,316,504,585,648,762,890,1101,29351,29420,29468,29578,29677,29747,29963,30073,30164,30307,30434,30665,
58513548800749664++JR804167150261497chr1122014068293573086311389,38,46,603,68,89,47,12,45,84,21,6,395,434,481,1085,1154,1243,1304,1325,1370,1476,29357,29747,29785,29831,30434,30502,30592,30650,30668,30714,30842,
585100798002322++BC00411515741031211chr112201406829408305154231,106,687,81,103,336,442,1130,29408,29640,29747,30434,
585739272000011++BC0532331429541065chr112201406829417304292330,681,54,384,29417,29748,
585727284000011++CR7260421410491060chr112201406829417304292330,681,49,379,29417,29748,
585749262000011++JP7461911468791090chr112201406829417304292330,681,79,409,29417,29748,
585754245000011++BT0752171414741073chr112201406829429304292318,681,74,392,29429,29748,
585691299000011++JR5202491175751065chr112201406829435304262312,678,75,387,29435,29748,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.