Schema for xenoRefFlat
  Database: canFam6    Primary Table: xenoRefFlat    Row Count: 231,722   Data last updated: 2021-05-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName PDHBvarchar(255) values Name of gene as it appears in genome browser.
name NR_033384varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 29408int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 30515int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 30515int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 30515int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 29408,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 30515,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        canFam6.xenoMrna.qName (via xenoRefFlat.name)
      canFam6.xenoRefGene.name (via xenoRefFlat.name)
      canFam6.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
PDHBNR_033384chr1+29408305153051530515129408,30515,
pdhbNM_213154chr1+29417304292941730429229417,29748,29747,30429,
PdhbNM_170387chr1+29453297382945329738129453,29738,
PdhbNM_170388chr1+29453297382945329738129453,29738,
PDHBNM_001198620chr1+29453304552945330455329453,29748,30434,29747,30432,30455,
LOC542483NM_001112036chr1+29459304232945930423429459,29748,30045,30327,29738,29997,30078,30423,
PDHBNM_001315536chr1+29469305152946930455329469,29747,30434,29746,30434,30515,
ECU04_1160NM_001041150chr1+29471302342947130234429471,29588,29757,30120,29555,29738,29985,30234,
pdb1NM_001022193chr1+29474304082947430408329474,29748,30267,29738,30135,30408,
MAB1NM_124463chr1+29474304232947430423429474,29748,30045,30327,29738,29997,30078,30423,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.