Schema for refGene
  Database: ci1    Primary Table: refGene    Row Count: 1,035   Data last updated: 2020-08-21
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name NM_001161803varchar(255) values Name of gene
chrom Scaffold_261varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 25255int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 31776int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 25332int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 31522int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 13int(10) unsigned range Number of exons
exonStarts 25255,25797,26657,27450,279...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 25437,25948,26770,27650,280...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ci1.all_est.qName (via refGene.name)
      ci1.all_mrna.qName (via refGene.name)
      ci1.mrnaOrientInfo.name (via refGene.name)
      ci1.refFlat.name (via refGene.name)
      ci1.refSeqAli.qName (via refGene.name)
      ci1.xenoMrna.qName (via refGene.name)
      ci1.xenoRefGene.name (via refGene.name)
      ci1.xenoRefSeqAli.qName (via refGene.name)
      hgFixed.gbCdnaInfo.acc (via refGene.name)
      hgFixed.gbMiscDiff.acc (via refGene.name)
      hgFixed.gbSeq.acc (via refGene.name)
      hgFixed.gbWarn.acc (via refGene.name)
      hgFixed.imageClone.acc (via refGene.name)
      hgFixed.refLink.mrnaAcc (via refGene.name)
      hgFixed.refSeqStatus.mrnaAcc (via refGene.name)
      hgFixed.refSeqSummary.mrnaAcc (via refGene.name)
      knownGeneV39.kgXref.refseq (via refGene.name)
      knownGeneV39.knownToRefSeq.value (via refGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NM_001161803Scaffold_261-252553177625332315221325255,25797,26657,27450,27904,28427,28973,29845,30487,31163,31287,31438,31735,25437,25948,26770,27650,28037,28526,29146,29975,30622,31213,31372,31528,31776,
NM_001161690Scaffold_69+1194471207161194931206601119447,120716,
NM_001161491Scaffold_145-19787720477819812220469515197877,198811,199417,199938,200221,200768,201151,201626,202170,202384,202919,203378,203773,204381,204640,198293,198997,199544,200060,200398,200939,201327,201837,202326,202560,203087,203513,203959,204462,204778,
NM_001161490Scaffold_158-1701021729531702151725206170102,170753,171297,171568,172293,172850,170376,170900,171427,171734,172558,172953,
NM_001161489Scaffold_414+302579453062784663025,4123,4618,6237,6855,7768,3151,4304,4801,6361,6974,7945,
NM_001160065Scaffold_346+163832306017459229131516383,17428,17997,18497,18700,18933,19557,20006,20140,20535,20944,21528,21867,22349,22847,16458,17602,18088,18624,18779,19004,19668,20077,20251,20636,21229,21604,22018,22429,23060,
NM_001159764Scaffold_139+24427259742447525745324427,24827,25627,24571,24904,25974,
NM_001278993Scaffold_237+017746017052240,2358,2583,3100,3374,7009,7033,10953,11664,11937,12178,12476,12692,12978,13524,14100,14554,14804,15154,15705,16011,16257,16691, ...2286,2499,3030,3295,7009,7032,10868,11575,11853,12107,12391,12609,12893,13449,14016,14451,14725,15076,15622,15928,16179,16580,16 ...
NM_001278988Scaffold_487-81211151871111488812,1388,1740,4039,4235,5750,6765,11013,1066,1532,1869,4147,4348,5925,6867,11151,
NM_001278985Scaffold_8-3002603109793003733109598300260,301834,302507,303677,304766,306726,308844,310663,300538,302008,302624,303803,304945,306912,309014,310979,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.