Schema for xenoRefGene
  Database: ci1    Primary Table: xenoRefGene    Row Count: 212,629   Data last updated: 2020-08-21
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name NM_014408varchar(255) values Name of gene
chrom Scaffold_327varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 60173int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 61289int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 60173int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 61289int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 60173,60679,61197,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 60356,60782,61289,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ci1.all_est.qName (via xenoRefGene.name)
      ci1.all_mrna.qName (via xenoRefGene.name)
      ci1.refGene.name (via xenoRefGene.name)
      ci1.refSeqAli.qName (via xenoRefGene.name)
      ci1.xenoMrna.qName (via xenoRefGene.name)
      ci1.xenoRefFlat.name (via xenoRefGene.name)
      ci1.xenoRefSeqAli.qName (via xenoRefGene.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefGene.name)
      hgFixed.gbMiscDiff.acc (via xenoRefGene.name)
      hgFixed.gbSeq.acc (via xenoRefGene.name)
      hgFixed.gbWarn.acc (via xenoRefGene.name)
      hgFixed.imageClone.acc (via xenoRefGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NM_014408Scaffold_327-60173612896017361289360173,60679,61197,60356,60782,61289,
NM_015017Scaffold_1025-151382471513824781513,2498,3588,3642,4123,5367,5967,8193,1618,2624,3627,3722,4229,5421,6063,8247,
NM_001011163Scaffold_442+36836442013683644201936836,37519,38606,38814,42369,42798,43336,43797,44096,36905,37603,38663,38913,42468,42969,43470,43822,44201,
NM_057677Scaffold_1144-655790136557901336557,7062,8911,6671,7173,9013,
NM_057815Scaffold_1166-856393438563934328563,9217,9208,9343,
NM_001095926Scaffold_27+4477804495734477804495733447780,449456,449534,447834,449504,449573,
NM_001198327Scaffold_306-61564624886156462488261564,62314,62296,62488,
NM_001077196Scaffold_413-93811120393811120339381,9788,11152,9435,9839,11203,
NM_001324027Scaffold_121-85184960488518496048885184,85307,85805,88396,89219,90624,95502,95961,85244,85382,85874,88441,89372,90762,95814,96048,
NM_181031Scaffold_87+2859872912402859872912406285987,288219,289361,289864,290645,291168,286197,288393,289451,290026,290764,291240,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.