Schema for estOrientInfo
  Database: criGri1    Primary Table: estOrientInfo    Row Count: 13   Data last updated: 2014-04-10
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AMDS01154049varchar(255) values Reference sequence chromosome or scaffold
chromStart 24int(10) unsigned range Start position in chromosome
chromEnd 130int(10) unsigned range End position in chromosome
name AF022944varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        criGri1.all_est.qName (via estOrientInfo.name)
      criGri1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AMDS0115404924130AF02294401000
595KE37771814203291424046AF18091811000
591KE378226871245871414AF022941000210
591KE378226872845873137AF02294210100
588KE378654402472403394AF022939-10000
588KE378654402495402673AF02294000000
588KE378654403441403652AF02293800000
585KE37947295839911AF022944-11000
590KE379480739051739157AF02294401000
604KE38000526075982607776AF02294500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.