Schema for intronEst
  Database: criGri1    Primary Table: intronEst    Row Count: 7   Data last updated: 2014-04-10
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 595smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1303int(10) unsigned range Number of bases that match that aren't repeats
misMatches 11int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 2403int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF180918varchar(255) values Query sequence name
qSize 1344int(10) unsigned range Query sequence size
qStart 29int(10) unsigned range Alignment start position in query
qEnd 1343int(10) unsigned range Alignment end position in query
tName KE377718varchar(255) values Target sequence name
tSize 2561508int(10) unsigned range Target sequence size
tStart 1420329int(10) unsigned range Alignment start position in target
tEnd 1424046int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 108,1206,longblob   Size of each block
qStarts 29,137,longblob   Start of each block in query.
tStarts 1420329,1422840,longblob   Start of each block in target.

Connected Tables and Joining Fields
        criGri1.all_est.qName (via intronEst.qName)
      criGri1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
595130311000012403+AF1809181344291343KE3777182561508142032914240462108,1206,29,137,1420329,1422840,
59121400000178-AF02294226046260KE37822615981938728458731372104,110,0,104,872845,873027,
588261000002661+AF0229392610261KE3786544727344024724033943197,56,8,0,197,253,402472,403329,403386,
585105100001222-AF0229441920106KE379472122120395839911238,68,86,124,9583,9843,
59476710000736820-FK0416747680768KE376974284275012015001239088877,95,107,126,63,95,170,35,0,77,172,279,405,468,563,733,1201500,1207143,1211061,1212581,1215822,1223850,1226977,1239053,
59039700000513691+FK0416754260397KE3807912166064702159716247666,47,51,101,80,52,0,66,113,164,265,345,702159,707094,709418,711040,712286,716195,
73958700116921938-FK0416769810981KE38171693980637081839372110105,81,144,92,77,73,141,108,12,132,0,105,186,330,422,515,588,729,837,849,370818,372763,373746,374393,376508,376606,377455,378440,386028,393589,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.