Schema for xenoMrna
  Database: danRer6    Primary Table: xenoMrna    Row Count: 5,942,379   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 330int(10) unsigned Number of bases that match that aren't repeats
misMatches 132int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName EZ859955varchar(255) Query sequence name
qSize 779int(10) unsigned Query sequence size
qStart 314int(10) unsigned Alignment start position in query
qEnd 776int(10) unsigned Alignment end position in query
tName Zv8_NA10002varchar(255) Target sequence name
tSize 2060int(10) unsigned Target sequence size
tStart 890int(10) unsigned Alignment start position in target
tEnd 1352int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 462,longblob Size of each block
qStarts 314,longblob Start of each block in query.
tStarts 708,longblob Start of each block in target.

Connected Tables and Joining Fields
        danRer6.all_est.qName (via xenoMrna.qName)
      danRer6.all_mrna.qName (via xenoMrna.qName)
      danRer6.refGene.name (via xenoMrna.qName)
      danRer6.refSeqAli.qName (via xenoMrna.qName)
      danRer6.xenoRefFlat.name (via xenoMrna.qName)
      danRer6.xenoRefGene.name (via xenoMrna.qName)
      danRer6.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585330132000000+-EZ859955779314776Zv8_NA10002206089013521462,314,708,
585144105000000++JO41542491115264Zv8_NA10002206091211611249,15,912,
585144105000000++JO4406451067189438Zv8_NA10002206091211611249,189,912,
585144105000000++JO5985141448206455Zv8_NA10002206091211611249,206,912,
585144105000000++JO6412151122200449Zv8_NA10002206091211611249,200,912,
58512786000000++AK0759571022131344Zv8_NA10002206096011731213,131,960,
585252111000026++AK05614120627261089Zv8_NA10003274315571926396,3,264,726,822,825,1557,1654,1662,
585252111000026++BC1211551721480843Zv8_NA10003274315571926396,3,264,480,576,579,1557,1654,1662,
585252111000026++BC1211561636480843Zv8_NA10003274315571926396,3,264,480,576,579,1557,1654,1662,
585253110000026++JI8888034701364Zv8_NA10003274315571926396,3,264,1,97,100,1557,1654,1662,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.