Schema for flyBaseBlastTab
  Database: dm3    Primary Table: flyBaseBlastTab    Row Count: 904,530   Data last updated: 2010-08-12
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query CG6741-RBvarchar(255) Name of sequence in this assembly (query)
target CG6741-RAvarchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 1329int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 1329int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 1329int(10) unsigned End in target (non-inclusive)
eValue 0double Expectation value
bitScore 1615double Bit score

Connected Tables and Joining Fields
        dm3.arbExpDistance.query (via flyBaseBlastTab.query)
      dm3.arbExpDistance.target (via flyBaseBlastTab.query)
      dm3.ceBlastTab.query (via flyBaseBlastTab.query)
      dm3.drBlastTab.query (via flyBaseBlastTab.query)
      dm3.flyBase2004Xref.name (via flyBaseBlastTab.query)
      dm3.flyBaseCanonical.transcript (via flyBaseBlastTab.query)
      dm3.flyBaseGene.name (via flyBaseBlastTab.query)
      dm3.flyBaseIsoforms.transcript (via flyBaseBlastTab.query)
      dm3.flyBaseNoncoding.name (via flyBaseBlastTab.query)
      dm3.flyBasePep.name (via flyBaseBlastTab.query)
      dm3.flyBaseToCG.name (via flyBaseBlastTab.query)
      dm3.flyBaseToDescription.name (via flyBaseBlastTab.query)
      dm3.flyBaseToPfam.name (via flyBaseBlastTab.query)
      dm3.flyBaseToRefSeq.name (via flyBaseBlastTab.query)
      dm3.flyBaseToUniProt.name (via flyBaseBlastTab.query)
      dm3.flyP2P.query (via flyBaseBlastTab.query)
      dm3.flyP2P.target (via flyBaseBlastTab.query)
      dm3.hgBlastTab.query (via flyBaseBlastTab.query)
      dm3.mmBlastTab.query (via flyBaseBlastTab.query)
      dm3.rnBlastTab.query (via flyBaseBlastTab.query)
      dm3.scBlastTab.query (via flyBaseBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG6741-RBCG6741-RA100132900013290132901615
CG6741-RBCG6741-RC100132900013290132901615
CG6741-RBCG6741-RB100132900013290132901615
CG6741-RBCG16757-RA36.269152312321320127213600.0000000259.3
CG6741-RBCG42230-RI35.781096421203131298710900.000000156.2
CG6741-RBCG42230-RJ35.7810964212031312173418370.000000156.2
CG6741-RBCG42230-RH35.781096421203131292510280.000000156.2
CG6741-RBCG42230-RG35.781096421203131292510280.000000156.2
CG6741-RBCG42230-RF35.781096421203131292510280.000000156.2
CG6741-RBCG42230-RE35.781096421203131299310960.000000156.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.