Schema for rnBlastTab
  Database: dm3    Primary Table: rnBlastTab    Row Count: 4,202   Data last updated: 2012-02-17
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query CG9773-RAvarchar(255) values Name of sequence in this assembly (query)
target RGD:621749varchar(255) values Name of sequence in other assembly (target)
identity 55.79float range Percent identity
aliLength 233int(10) unsigned range Length of alignment
mismatch 102int(10) unsigned range Number of mismatches
gapOpen 1int(10) unsigned range Number of gap openings
qStart 42int(10) unsigned range Start in query (0 based)
qEnd 274int(10) unsigned range End in query (non-inclusive)
tStart 25int(10) unsigned range Start in target (0 based)
tEnd 258int(10) unsigned range End in target (non-inclusive)
eValue 2.0000000000000002e-71double range Expectation value
bitScore 264double range Bit score

Connected Tables and Joining Fields
        dm3.arbExpDistance.query (via rnBlastTab.query)
      dm3.arbExpDistance.target (via rnBlastTab.query)
      dm3.ceBlastTab.query (via rnBlastTab.query)
      dm3.drBlastTab.query (via rnBlastTab.query)
      dm3.flyBase2004Xref.name (via rnBlastTab.query)
      dm3.flyBaseBlastTab.query (via rnBlastTab.query)
      dm3.flyBaseBlastTab.target (via rnBlastTab.query)
      dm3.flyBaseCanonical.transcript (via rnBlastTab.query)
      dm3.flyBaseGene.name (via rnBlastTab.query)
      dm3.flyBaseIsoforms.transcript (via rnBlastTab.query)
      dm3.flyBaseNoncoding.name (via rnBlastTab.query)
      dm3.flyBasePep.name (via rnBlastTab.query)
      dm3.flyBaseToCG.name (via rnBlastTab.query)
      dm3.flyBaseToDescription.name (via rnBlastTab.query)
      dm3.flyBaseToPfam.name (via rnBlastTab.query)
      dm3.flyBaseToRefSeq.name (via rnBlastTab.query)
      dm3.flyBaseToUniProt.name (via rnBlastTab.query)
      dm3.flyP2P.query (via rnBlastTab.query)
      dm3.flyP2P.target (via rnBlastTab.query)
      dm3.hgBlastTab.query (via rnBlastTab.query)
      dm3.mmBlastTab.query (via rnBlastTab.query)
      dm3.scBlastTab.query (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG9773-RARGD:62174955.79233102142274252582.0000000000000002e-71264
CG13761-RBRGD:156263528.9436271827459174185e-52201
CG5826-RARGD:62004068.5919158141232652548.000000000000001e-75275
CG14750-RARGD:158468543.6172961317441762.9999999999999996e-42166
CG14749-RARGD:130732931.3433521053586773656962e-46182
CG3408-RARGD:130509245.09173912017301692e-34141
CG32555-RARGD:130873834.3962585173936139572.0000000000000002e-163573
CG9333-RBRGD:131200635.56734457930762167365e-140494
CG6815-RARGD:130596461.735882172058805800651
CG33544-RARGD:130310737.91153853014301531.9999999999999997e-1990.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.