Schema for xenoRefFlat
  Database: droVir1    Primary Table: xenoRefFlat    Row Count: 358,609   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CG8360varchar(255) values Name of gene as it appears in genome browser.
name NM_001273303varchar(255) values Name of gene
chrom scaffold_2varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 255564int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 256182int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 255567int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 256182int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 4int(10) unsigned range Number of exons
exonStarts 255564,255695,255910,255957,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 255631,255883,255913,256182,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        droVir1.xenoMrna.qName (via xenoRefFlat.name)
      droVir1.xenoRefGene.name (via xenoRefFlat.name)
      droVir1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CG8360NM_001273303scaffold_2+2555642561822555672561824255564,255695,255910,255957,255631,255883,255913,256182,
CG7430NM_001275071scaffold_0+235963723612472359637236124742359637,2360174,2360231,2361181,2360161,2360178,2361110,2361247,
PRSS3NM_205385scaffold_44-2581632582862581632582862258163,258256,258220,258286,
PRSS3NM_205385scaffold_1-530152053103665301520531036635301520,5301904,5310300,5301682,5301952,5310366,
PRSS3NM_205385scaffold_1+531963953200445319639532004425319639,5319930,5319696,5320044,
Cnot7NR_155265scaffold_0-144597114486991448699144869931445971,1447895,1448432,1446031,1448315,1448699,
Cnot7NR_155266scaffold_0-144597114486991448699144869931445971,1447895,1448432,1446031,1448315,1448699,
LOC100381760NM_001361542scaffold_4+331867333202123318673332021253318673,3318955,3319417,3319679,3320113,3318925,3319102,3319609,3319690,3320212,
LOC100381906NM_001361553scaffold_6+136406813656101364068136561041364068,1364773,1364995,1365484,1364617,1364917,1365226,1365610,
Epn3NM_001361558scaffold_32+4664844670674664844670673466484,466569,466974,466565,466752,467067,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.