Schema for xenoRefSeqAli
  Database: droVir1    Primary Table: xenoRefSeqAli    Row Count: 358,609   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 116int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 34int(10) unsigned range Number of bases inserted in query
tNumInsert 6int(10) unsigned range Number of inserts in target
tBaseInsert 975793int(10) unsigned range Number of bases inserted in target
strand ++char(2) values + or - for strand. First character query, second target (optional)
qName NM_177763varchar(255) values Query sequence name
qSize 4782int(10) unsigned range Query sequence size
qStart 2147int(10) unsigned range Alignment start position in query
qEnd 2302int(10) unsigned range Alignment end position in query
tName scaffold_0varchar(255) values Target sequence name
tSize 8062012int(10) unsigned range Target sequence size
tStart 21647int(10) unsigned range Alignment start position in target
tEnd 997561int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 18,10,22,1,22,24,24,longblob   Size of each block
qStarts 2147,2167,2177,2199,2200,22...longblob   Start of each block in query.
tStarts 21647,21706,296415,331362,7...longblob   Start of each block in target.

Connected Tables and Joining Fields
        droVir1.all_mrna.qName (via xenoRefSeqAli.qName)
      droVir1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droVir1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droVir1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
731165003346975793++NM_177763478221472302scaffold_0806201221647997561718,10,22,1,22,24,24,2147,2167,2177,2199,2200,2230,2278,21647,21706,296415,331362,729823,935535,997537,
585106916300919881433016++NM_001038937336103220scaffold_0806201249842840901542,40,45,30,24,165,88,75,65,221,83,143,27,160,24,0,515,672,830,1265,1319,1508,1596,1671,1736,1957,2040,2540,2657,3196,49842,69507,69610,69681,70161,70203,74005,75023,75362,75485,77825,82892,83352,83494,84066,
585136821400611591559207++NM_001038934316402741scaffold_08062012498421106311642,40,45,30,24,165,88,65,221,83,138,153,215,3,111,159,0,512,669,827,1262,1316,1505,1593,1658,1879,1962,2100,2253,2468,2471,2582,49842,69507,69610,69681,70161,70203,74005,75362,75485,77825,82892,84429,90555,91029,110287,110472,
585148322500611621759081++NM_001038935329302870scaffold_08062012498421106311842,40,45,30,24,165,88,75,65,221,83,138,153,215,51,3,111,159,0,515,672,830,1265,1319,1508,1596,1671,1736,1957,2040,2178,2331,2546,2597,2600,2711,49842,69507,69610,69681,70161,70203,74005,75023,75362,75485,77825,82892,83496,90555,101975,102056,110287,110472,
585143322400611591659132++NM_001038936323902816scaffold_08062012498421106311742,40,45,30,24,165,88,75,65,221,83,138,153,215,3,111,159,0,512,669,827,1262,1316,1505,1593,1668,1733,1954,2037,2175,2328,2543,2546,2657,49842,69507,69610,69681,70161,70203,74005,75023,75362,75485,77825,82892,83496,90555,91029,110287,110472,
585144822500715911659116++NM_001169979368703264scaffold_08062012498421106311742,40,45,30,24,165,88,75,65,221,83,138,153,215,13,117,159,0,515,672,830,1265,1319,1508,1596,1671,1736,1957,2040,2178,2331,2546,2988,3105,49842,69507,69610,69681,70161,70203,74005,75023,75362,75485,77825,82892,83496,90555,109376,110281,110472,
585152424300816281759022++NM_001274968381803395scaffold_08062012498421106311842,40,45,30,24,167,89,75,65,221,83,138,153,220,81,24,111,159,0,515,672,830,1265,1319,1486,1575,1650,1715,1936,2019,2157,2310,2663,2795,3125,3236,49842,69507,69610,69681,70161,70203,74004,75023,75362,75485,77825,82892,84429,90555,105139,105292,110287,110472,
585149626500915591759028++NM_001274970374303320scaffold_08062012498421106311842,40,45,30,24,167,89,65,221,83,138,153,220,81,24,69,111,159,0,515,672,830,1265,1319,1486,1575,1640,1861,1944,2082,2235,2588,2720,2948,3050,3161,49842,69507,69610,69681,70161,70203,74004,75362,75485,77825,82892,83496,90555,105139,105292,105526,110287,110472,
585143622100511381559132++NM_001274971321802795scaffold_08062012498421106311642,40,45,30,24,167,89,75,65,221,83,138,153,215,111,159,0,515,672,830,1265,1319,1486,1575,1650,1715,1936,2019,2157,2310,2525,2636,49842,69507,69610,69681,70161,70203,74004,75023,75362,75485,77825,82892,84429,90555,110287,110472,
5851641271001131872061303++NM_001274969662905099scaffold_08062012498421130572142,40,45,30,24,165,88,75,65,221,83,138,153,215,57,81,24,69,111,159,27,0,515,672,830,1265,1319,1508,1596,1671,1736,1957,2040,2178,2331,2546,2735,2867,3095,3197,3308,5072,49842,69507,69610,69681,70161,70203,74005,75023,75362,75485,77825,82892,84429,90555,101975,105139,105292,105526,110287,110472,11 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.