Schema for all_mrna
  Database: droVir2    Primary Table: all_mrna    Row Count: 108   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 766int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 4int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 173int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName EU417438varchar(255) values Query sequence name
qSize 13701int(10) unsigned range Query sequence size
qStart 1540int(10) unsigned range Alignment start position in query
qEnd 2310int(10) unsigned range Alignment end position in query
tName scaffold_10022varchar(255) values Target sequence name
tSize 4390int(10) unsigned range Target sequence size
tStart 330int(10) unsigned range Alignment start position in target
tEnd 1269int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 156,292,113,148,57,longblob   Size of each block
qStarts 11391,11547,11839,11952,12104,longblob   Start of each block in query.
tStarts 330,541,890,1062,1212,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droVir2.all_est.qName (via all_mrna.qName)
      droVir2.mrnaOrientInfo.name (via all_mrna.qName)
      droVir2.xenoMrna.qName (via all_mrna.qName)
      droVir2.xenoRefGene.name (via all_mrna.qName)
      droVir2.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585766000144173-EU4174381370115402310scaffold_10022439033012695156,292,113,148,57,11391,11547,11839,11952,12104,330,541,890,1062,1212,
5851600000000+EU5954021249529773137scaffold_11586131301601160,2977,0,
585105902000152-EU417438137011047011531scaffold_126106535011132888,173,2170,3058,0,940,
58541109000253-EU4174404200420scaffold_12610653564711203241,170,9,0,241,411,647,940,1111,
604710100002118+AB0336407110711scaffold_12723580052225018812502710360,405,246,0,60,465,2501881,2502001,2502464,
604709200002118+AB0336407110711scaffold_12723580052225089412509770360,405,246,0,60,465,2508941,2509061,2509524,
58627381125901291886-AF419620302203010scaffold_1272628461331745431794371040,195,29,186,927,549,103,216,201,562,12,54,249,278,464,1391,1940,2043,2259,2460,174543,174584,174780,174810,174997,176030,176643,177106,178364,178875,
588245471220165269+AF419623260402589scaffold_1272628461334053474081997185,36,823,103,129,1149,158,0,185,227,1050,1153,1282,2431,405347,405538,405574,406461,406632,406820,408041,
5862880000000+EU3341391783196484scaffold_127352509381604731607611288,196,160473,
5862880000000+GU9374181783196484scaffold_127352509381604731607611288,196,160473,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.