Schema for mrnaOrientInfo
  Database: droVir2    Primary Table: mrnaOrientInfo    Row Count: 108   Data last updated: 2020-08-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_10022varchar(255) values Reference sequence chromosome or scaffold
chromStart 330int(10) unsigned range Start position in chromosome
chromEnd 1269int(10) unsigned range End position in chromosome
name EU417438varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 2smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droVir2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_100223301269EU41743832000
585scaffold_115860160EU59540200000
585scaffold_1261001113EU41743812000
585scaffold_126106471120EU41744010000
604scaffold_1272325018812502710AB03364020000
604scaffold_1272325089412509770AB03364020000
586scaffold_12726174543179437AF419620512000
588scaffold_12726405347408199AF4196233150390
586scaffold_12735160473160761EU334139019000
586scaffold_12735160473160761GU937418019000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.