Schema for all_est
  Database: droYak2    Primary Table: all_est    Row Count: 11,143   Data last updated: 2016-03-29
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 436int(10) unsigned range Number of bases that match that aren't repeats
misMatches 19int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 250int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName BQ705291varchar(255) values Query sequence name
qSize 498int(10) unsigned range Query sequence size
qStart 19int(10) unsigned range Alignment start position in query
qEnd 478int(10) unsigned range Alignment end position in query
tName chr2Lvarchar(255) values Target sequence name
tSize 22324452int(10) unsigned range Target sequence size
tStart 144701int(10) unsigned range Alignment start position in target
tEnd 145407int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 45,20,121,97,114,6,46,7,longblob   Size of each block
qStarts 19,65,85,207,304,419,425,471,longblob   Start of each block in query.
tStarts 144701,144746,144941,145062...longblob   Start of each block in target.

Connected Tables and Joining Fields
        droYak2.all_mrna.qName (via all_est.qName)
      droYak2.est.qName (via all_est.qName)
      droYak2.estOrientInfo.name (via all_est.qName)
      droYak2.intronEst.qName (via all_est.qName)
      droYak2.xenoMrna.qName (via all_est.qName)
      droYak2.xenoRefGene.name (via all_est.qName)
      droYak2.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5864361901334250+BQ70529149819478chr2L22324452144701145407845,20,121,97,114,6,46,7,19,65,85,207,304,419,425,471,144701,144746,144941,145062,145232,145346,145353,145400,
588585300001148+BQ7056416100588chr2L223244524043084050442177,411,0,177,404308,404633,
597645900114664-BQ7051606880655chr2L223244521586264158758268,11,26,41,380,188,33,41,52,79,120,500,1586264,1586273,1586285,1586311,1586492,1587394,
60158215001100-BQ7052677520598chr2L22324452222608122266782592,5,154,747,2226081,2226673,
60258215001100-BQ7052677520598chr2L22324452223258422331812592,5,154,747,2232584,2233176,
602592700112129-BQ7051448650600chr2L2232445223556072356335447,46,292,214,265,313,359,651,2355607,2355654,2355757,2356121,
604841100011364-BQ70549311250852chr2L2232445225627422563657522,8,56,749,16,273,295,303,360,1109,2562742,2562765,2562774,2562830,2563641,
605401321900022389+BQ70587097723646chr2L22324452274890427519163290,163,170,23,313,476,2748904,2751514,2751746,
60538319268052652418+BQ7052717030696chr2L22324452274897527520638219,163,89,126,36,12,9,16,0,219,382,473,600,641,664,680,2748975,2751514,2751746,2751835,2751961,2752003,2752028,2752047,
606366000003203+BQ7056143949375chr2L2232445228505072851076439,59,192,76,9,48,107,299,2850507,2850617,2850747,2851000,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.