Schema for estOrientInfo
  Database: droYak2    Primary Table: estOrientInfo    Row Count: 11,143   Data last updated: 2016-03-29
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 144701int(10) unsigned range Start position in chromosome
chromEnd 145407int(10) unsigned range End position in chromosome
name BQ705291varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 10smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droYak2.all_est.qName (via estOrientInfo.name)
      droYak2.est.qName (via estOrientInfo.name)
      droYak2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr2L144701145407BQ705291210000
588chr2L404308405044BQ70564110000
597chr2L15862641587582BQ70516020000
601chr2L22260812226678BQ70526700000
602chr2L22325842233181BQ70526700000
602chr2L23556072356335BQ70514420000
604chr2L25627422563657BQ70549310000
605chr2L27489042751916BQ70587023000
605chr2L27489752752063BQ705271210260
606chr2L28505072851076BQ705614319000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.