Schema for estOrientInfo
  Database: galGal2    Primary Table: estOrientInfo    Row Count: 587,010   Data last updated: 2020-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 17411int(10) unsigned Start position in chromosome
chromEnd 17757int(10) unsigned End position in chromosome
name CD727395varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal2.all_est.qName (via estOrientInfo.name)
      galGal2.est.qName (via estOrientInfo.name)
      galGal2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11741117757CD72739500000
585chr11766418238BQ03816805000
585chr12193923009DR41998800000
585chr12194822800BU426918040200
585chr12195722716CN77819202006
585chr12196422791BU30382200000
585chr12199022770BU32965100000
585chr12199522568CF25696900000
585chr12203022662BU29922300000
585chr12204422662BU47256800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.