Schema for intronEst
  Database: galGal2    Primary Table: intronEst (chr1_intronEst)    Row Count: 33,630   Data last updated: 2020-05-08
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 565int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 5308int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BU481325varchar(255) values Query sequence name
qSize 577int(10) unsigned range Query sequence size
qStart 4int(10) unsigned range Alignment start position in query
qEnd 570int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 188239860int(10) unsigned range Target sequence size
tStart 24357int(10) unsigned range Alignment start position in target
tEnd 30231int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 393,173,longblob   Size of each block
qStarts 7,400,longblob   Start of each block in query.
tStarts 24357,30058,longblob   Start of each block in target.

Connected Tables and Joining Fields
        galGal2.all_est.qName (via intronEst.qName)
      galGal2.est.qName (via intronEst.qName)
      galGal2.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5855650010015308-BU4813255774570chr118823986024357302312393,173,7,400,24357,30058,
58577030028188331-BU21492281613794chr118823986024575336791913,5,5,4,6,8,14,8,35,8,44,11,164,5,60,63,130,105,85,22,35,40,47,51,57,65,79,87,122,130,174,185,355,360,420,483,613,718,24575,24589,24595,24604,24609,24616,24625,24640,24649,24685,24694,24739,30058,31646,31652,31870,32132,33151,33594,
585587401002357+AL5883675920592chr118823986031227321763485,63,44,0,485,548,31227,31870,32132,
5855055000053243-CN2308475100510chr118823986034513382666107,125,57,75,67,79,0,107,232,289,364,431,34513,35431,36749,37100,37484,38187,
5857674003366211-BU4058997750774chr11882398603711544097106,25,15,14,67,97,126,288,3,130,1,8,34,50,64,131,228,354,642,645,37115,37121,37146,37161,37484,38187,38562,43674,43963,43967,
5857753001366215-BU3757267936787chr11882398603711544108830,29,67,97,126,370,50,9,6,36,65,132,229,355,728,778,37115,37146,37484,38187,38562,43674,44044,44099,
5856192002345267-DN8514486240624chr11882398603820944097663,10,126,149,210,63,0,63,73,199,349,561,38209,38274,38562,43674,43823,44034,
5856334570002915-BU4476446940694chr11882398607704878657360,574,60,0,60,634,77048,77109,78597,
58578411001124143-BU2749338070807chr11882398609771798655539,55,219,442,40,0,51,106,325,767,97717,97764,97820,98040,98615,
585850602123081044-BU13972910784892chr118823986097855997571811,15,5,10,11,18,8,16,15,8,11,35,50,360,34,73,99,79,186,200,227,233,244,256,275,284,303,320,329,343,378,429,789,823,896,995,97855,97870,97898,97903,97913,97924,97942,97950,97967,97982,97990,98001,98037,98087,98448,98615,99184,99678,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.