Schema for refGene
  Database: galGal2    Primary Table: refGene    Row Count: 7,494   Data last updated: 2020-08-21
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name NM_001099355varchar(255) values Name of gene
chrom chr16varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 159991int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 164258int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 159991int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 164258int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 16int(10) unsigned range Number of exons
exonStarts 159991,160199,160467,160592...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 160083,160349,160488,160613...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal2.all_est.qName (via refGene.name)
      galGal2.all_mrna.qName (via refGene.name)
      galGal2.mrnaOrientInfo.name (via refGene.name)
      galGal2.refFlat.name (via refGene.name)
      galGal2.refSeqAli.qName (via refGene.name)
      galGal2.xenoMrna.qName (via refGene.name)
      galGal2.xenoRefGene.name (via refGene.name)
      galGal2.xenoRefSeqAli.qName (via refGene.name)
      hgFixed.gbCdnaInfo.acc (via refGene.name)
      hgFixed.gbMiscDiff.acc (via refGene.name)
      hgFixed.gbSeq.acc (via refGene.name)
      hgFixed.gbWarn.acc (via refGene.name)
      hgFixed.imageClone.acc (via refGene.name)
      hgFixed.refLink.mrnaAcc (via refGene.name)
      hgFixed.refSeqStatus.mrnaAcc (via refGene.name)
      hgFixed.refSeqSummary.mrnaAcc (via refGene.name)
      knownGeneV39.kgXref.refseq (via refGene.name)
      knownGeneV39.knownToRefSeq.value (via refGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NM_001099355chr16-15999116425815999116425816159991,160199,160467,160592,161220,161344,161463,161587,161718,161843,161974,162225,162613,162942,163463,164158,160083,160349,160488,160613,161241,161368,161484,161608,161739,161864,161995,162246,162634,163047,163805,164258,
NM_001097535chr3+50829163508336435082971550832799350829163,50829633,50832618,50829197,50829750,50833643,
NM_204474chr4-736078127362773973610693736223841373607812,73612021,73612233,73613716,73614584,73617244,73617956,73619703,73620432,73621414,73622042,73622278,73627701,73611269,73612146,73612350,73613884,73614705,73617340,73618152,73619815,73620576,73621543,73622177,73622393,73627739,
NM_204419chr1+16089966416097683116089966416097517926160899664,160908258,160910583,160912690,160913864,160914959,160917103,160918402,160920816,160921695,160925701,160926458,16092731 ...160899754,160908371,160910718,160912729,160913932,160915070,160917252,160918480,160920926,160921773,160925789,160926575,16092737 ...
NM_204147chr13+7060749708576770685157085400157060749,7068327,7074103,7074822,7075179,7076300,7076823,7077552,7077886,7079198,7080280,7080785,7082685,7083669,7085349,7060879,7069406,7074165,7074864,7075283,7076353,7076949,7077678,7078057,7079330,7080324,7081176,7083079,7083791,7085767,
NM_204306chr14-419516742162414195209421609564195167,4197736,4205145,4207555,4214810,4216032,4195214,4197863,4205333,4207660,4214907,4216241,
NM_204321chr27+73145974858873145974856812731459,739621,741145,742272,742763,743164,743625,744514,745690,746685,747011,748427,731549,739741,741231,742379,742884,743318,743686,744587,745776,746821,747053,748588,
NM_001277802chr12-12130693126430191213793312511652912130693,12137931,12208899,12259982,12260684,12511552,12583574,12587885,12642993,12131033,12138035,12208968,12260012,12260830,12511673,12583634,12587928,12643019,
NM_001277792chr1-1604743501604829041604744941604825298160474350,160475999,160478487,160478865,160481598,160481874,160482461,160482849,160474575,160476169,160478607,160478990,160481697,160481963,160482537,160482904,
NM_001277801chrUn-824226182430208242700824299718242261,8243020,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.