Schema for xenoMrna
  Database: galGal2    Primary Table: xenoMrna    Row Count: 6,835,994   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 345int(10) unsigned Number of bases that match that aren't repeats
misMatches 61int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 338int(10) unsigned Number of bases inserted in query
tNumInsert 5int(10) unsigned Number of inserts in target
tBaseInsert 95529int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AB174544varchar(255) Query sequence name
qSize 1432int(10) unsigned Query sequence size
qStart 94int(10) unsigned Alignment start position in query
qEnd 838int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 188239860int(10) unsigned Target sequence size
tStart 3818int(10) unsigned Alignment start position in target
tEnd 99753int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 75,98,74,110,22,27,longblob Size of each block
qStarts 94,169,267,341,763,811,longblob Start of each block in query.
tStarts 188140107,188140577,1881411...longblob Start of each block in target.

Connected Tables and Joining Fields
        galGal2.all_est.qName (via xenoMrna.qName)
      galGal2.all_mrna.qName (via xenoMrna.qName)
      galGal2.refGene.name (via xenoMrna.qName)
      galGal2.refSeqAli.qName (via xenoMrna.qName)
      galGal2.xenoRefFlat.name (via xenoMrna.qName)
      galGal2.xenoRefGene.name (via xenoMrna.qName)
      galGal2.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58534561002338595529+-AB174544143294838chr1188239860381899753675,98,74,110,22,27,94,169,267,341,763,811,188140107,188140577,188141171,188141378,188228657,188236015,
585104819600237711114728+-AF54255027091511772chr1188239860381811979012140,111,174,97,56,132,151,74,98,74,110,27,151,291,402,576,673,741,873,1024,1098,1196,1270,1745,188120070,188121569,188122204,188123434,188124421,188137611,188139272,188140108,188140577,188141171,188141378,188236015,
585658000000+-AL583908323531433216chr11882398602193922012173,3143,188217848,
585122728400225591515240+-CR86084341961084178chr1188239860219393869017128,96,1,67,75,2,55,123,210,147,105,125,68,65,120,51,73,108,236,332,333,400,475,477,532,655,865,1012,1117,1242,1310,1375,1498,4105,188201170,188201576,188201676,188202309,188202685,188202935,188203056,188204304,188205238,188206119,188206604,188207598,18820792 ...
585657000000+-AJ227868230158230chr11882398602194022012172,158,188217848,
585657000000+-AK094645329732253297chr11882398602194022012172,3225,188217848,
585909001415513674+-BC04265646512744528chr11882398602194025713227,72,274,4456,188214147,188217848,
585122828200225681515240+-BC0372584153594137chr1188239860219403869017128,96,1,67,75,2,55,123,210,147,105,130,63,65,123,48,72,59,187,283,284,351,426,428,483,606,816,963,1068,1198,1261,1326,1452,4065,188201170,188201576,188201676,188202309,188202685,188202935,188203056,188204304,188205238,188206119,188206604,188207598,18820792 ...
585125328400326011615213+-CR8614564245914229chr1188239860219403869018128,96,1,67,75,2,55,123,210,147,105,125,68,65,120,51,27,72,91,219,315,316,383,458,460,515,638,848,995,1100,1225,1293,1358,1481,1570,4157,188201170,188201576,188201676,188202309,188202685,188202935,188203056,188204304,188205238,188206119,188206604,188207598,18820792 ...
58589519000427441115665+-AK1313073923943923chr1188239860219403869013128,96,1,67,75,2,55,210,147,61,121,50,72,94,222,318,319,386,461,463,691,901,1050,1111,1235,3851,188201170,188201576,188201676,188202309,188202685,188202935,188203056,188205238,188206119,188207929,188209631,188209752,18821784 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.