Schema for foldUtr5
  Database: hg17    Primary Table: foldUtr5    Row Count: 33,765   Data last updated: 2005-06-06
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000409varchar(255) values mRNA accession
seq GCGAUCUGCAGGUAGGGGUGCGCGCGA...longblob   mRNA sequence (U's instead of T's)
fold (((((((.(((...((((.(((........longblob   Parenthesis and .'s that describe folding
energy -53.5float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via foldUtr5.name)
      hg17.ccdsKgMap.geneId (via foldUtr5.name)
      hg17.ceBlastTab.query (via foldUtr5.name)
      hg17.dmBlastTab.query (via foldUtr5.name)
      hg17.drBlastTab.query (via foldUtr5.name)
      hg17.dupSpMrna.mrnaID (via foldUtr5.name)
      hg17.foldUtr3.name (via foldUtr5.name)
      hg17.gladHumESDistance.query (via foldUtr5.name)
      hg17.gladHumESDistance.target (via foldUtr5.name)
      hg17.gnfAtlas2Distance.query (via foldUtr5.name)
      hg17.gnfAtlas2Distance.target (via foldUtr5.name)
      hg17.gnfU95Distance.query (via foldUtr5.name)
      hg17.gnfU95Distance.target (via foldUtr5.name)
      hg17.humanHprdP2P.query (via foldUtr5.name)
      hg17.humanHprdP2P.target (via foldUtr5.name)
      hg17.humanVidalP2P.query (via foldUtr5.name)
      hg17.humanVidalP2P.target (via foldUtr5.name)
      hg17.humanWankerP2P.query (via foldUtr5.name)
      hg17.humanWankerP2P.target (via foldUtr5.name)
      hg17.keggPathway.kgID (via foldUtr5.name)
      hg17.kgAlias.kgID (via foldUtr5.name)
      hg17.kgProtAlias.kgID (via foldUtr5.name)
      hg17.kgSpAlias.kgID (via foldUtr5.name)
      hg17.kgTargetAli.qName (via foldUtr5.name)
      hg17.kgXref.kgID (via foldUtr5.name)
      hg17.knownBlastTab.query (via foldUtr5.name)
      hg17.knownBlastTab.target (via foldUtr5.name)
      hg17.knownCanonical.transcript (via foldUtr5.name)
      hg17.knownExpDistance.query (via foldUtr5.name)
      hg17.knownExpDistance.target (via foldUtr5.name)
      hg17.knownGene.name (via foldUtr5.name)
      hg17.knownGeneLink.name (via foldUtr5.name)
      hg17.knownGeneMrna.name (via foldUtr5.name)
      hg17.knownGenePep.name (via foldUtr5.name)
      hg17.knownIsoforms.transcript (via foldUtr5.name)
      hg17.knownToAllenBrain.name (via foldUtr5.name)
      hg17.knownToEnsembl.name (via foldUtr5.name)
      hg17.knownToGnf1h.name (via foldUtr5.name)
      hg17.knownToGnfAtlas2.name (via foldUtr5.name)
      hg17.knownToHInv.name (via foldUtr5.name)
      hg17.knownToHprd.name (via foldUtr5.name)
      hg17.knownToKeggEntrez.name (via foldUtr5.name)
      hg17.knownToLocusLink.name (via foldUtr5.name)
      hg17.knownToPfam.name (via foldUtr5.name)
      hg17.knownToRefSeq.name (via foldUtr5.name)
      hg17.knownToSuper.gene (via foldUtr5.name)
      hg17.knownToU133.name (via foldUtr5.name)
      hg17.knownToU133Plus2.name (via foldUtr5.name)
      hg17.knownToU95.name (via foldUtr5.name)
      hg17.knownToVisiGene.name (via foldUtr5.name)
      hg17.mmBlastTab.query (via foldUtr5.name)
      hg17.rankProp.query (via foldUtr5.name)
      hg17.rankProp.target (via foldUtr5.name)
      hg17.rnBlastTab.query (via foldUtr5.name)
      hg17.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.bioCycPathway.kgID (via foldUtr5.name)
      knownGeneV39.ceBlastTab.query (via foldUtr5.name)
      knownGeneV39.dmBlastTab.query (via foldUtr5.name)
      knownGeneV39.drBlastTab.query (via foldUtr5.name)
      knownGeneV39.foldUtr3.name (via foldUtr5.name)
      knownGeneV39.foldUtr5.name (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr5.name)
      knownGeneV39.kgAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgColor.kgID (via foldUtr5.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr5.name)
      knownGeneV39.kgXref.kgID (via foldUtr5.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr5.name)
      knownGeneV39.knownBlastTab.query (via foldUtr5.name)
      knownGeneV39.knownBlastTab.target (via foldUtr5.name)
      knownGeneV39.knownCanonical.protein (via foldUtr5.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr5.name)
      knownGeneV39.knownCds.name (via foldUtr5.name)
      knownGeneV39.knownGene.name (via foldUtr5.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr5.name)
      knownGeneV39.knownGenePep.name (via foldUtr5.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr5.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr5.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr5.name)
      knownGeneV39.knownToHprd.name (via foldUtr5.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr5.name)
      knownGeneV39.knownToMrna.name (via foldUtr5.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr5.name)
      knownGeneV39.knownToMupit.name (via foldUtr5.name)
      knownGeneV39.knownToPfam.name (via foldUtr5.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr5.name)
      knownGeneV39.knownToSuper.gene (via foldUtr5.name)
      knownGeneV39.knownToTag.name (via foldUtr5.name)
      knownGeneV39.knownToU133.name (via foldUtr5.name)
      knownGeneV39.knownToU95.name (via foldUtr5.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr5.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr5.name)
      knownGeneV39.mmBlastTab.query (via foldUtr5.name)
      knownGeneV39.rnBlastTab.query (via foldUtr5.name)
      knownGeneV39.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr5.name)

Sample Rows
 
nameseqfoldenergy
AB000409GCGAUCUGCAGGUAGGGGUGCGCGCGACCGCUCCCCGGCGGGAGCCAGCGAAGGUUUCCAUGUCAGAGGCCAAUGGAGAACUGAAGAUUGCCACCUACGCACAAAGGCCAUUGAGACACUUCGUGUAG ...(((((((.(((...((((.(((......))).))))(((....)))......((((((.......)))))).........))).)))))))..(((........)))(((.(((((...(((.(((.. ...-53.5
AB000460CACAAUGACAUGCAGACCUGCAUAUUGGAGCUGGACGGAGAAACUGGGCUAAUGUGACAGACAGCAACAAGAGUAAGGCAGUUGCUUCGCUAUUGAGAGAAAGAACCAUAUGAAGAAAUUUCGGCAGA ....................(((((((((((..(..(.........)..).)))))))).))).((((..(((.((..((((....))))..)).)))...........(((((.......(((((((... ...-119.31
AB000461CACAAUGACAUGCAGACCUGCAUAUUGGAGCUGGACGGAGAAACUGGGCUAAUGUGACAGACAGCAACAAGAGUAAGGCAGUUGCUUCGCUAUUGAGAGAAAGAACCAUAUGAAGAAAUUUCGGCAGA ....................(((((((((((..(..(.........)..).)))))))).))).((((..(((.((..((((....))))..)).)))...........(((((.......(((((((... ...-119.31
AB000463CAGCCGGGUGACCCAGGCCGAGGCCGGCAGAAGACAGCCUGAUGCCUUGAAGACUUCCUCUUGCACUUUUGUUGGAGGGUGCUGGUUUGCUAAAAGCAGAGAGUAUUUUUCUUUUUAUUUAUUUUGUU ....(((..((((.(((.((..(((((.(((........))).((.(((..((.((((((((((.(((....))).)))))).(((((...(((((((..(((((((........................ ...-81.59
AB000781AGAACGUGUCUCUGGCUGACAUCCUCUCCCUGCGGGACCGCGGCCUCAGCGAGCAGGAAGCCUGGGCCGUGUGCCUGGAGUGCAGCCUGUCC.............(((((.((....((((....(((..(((((((.(((...((.....))))))))))))..)))))))))))))).....-35
AB000815CUGGAUCUGGGGUGUAAGAACUGUGACUUCAGAUCAUCCAAUGGCAGACCAGAGAAUGGACAUUUCUUCAACCAUCAGUGAUUUCAUGUCCCCGGGCCCCACCGACCUGCUUUCCAGCUCUCUUGGUA ......((((((((((............)))))))))).(((...((((...........((((((....(((........)))....))))))...((((((((((...((((..((((.((.((((... ...-75.8
AB001025GCAGCAGCAGUCAGCGCACGCCGAGCGGCUGCCGGGGGAAGCAGAGGCGCCGGAGGCUGGGGCACCGCCGACGCCUCGGGAGCC(((((.((..((.((....)).)))).))))).............(((.((.(((((...(((...)))...))))).)).)))-35.2
AB001328CAGUCACCGGUAAGUUACUGAAUCUGCGUUGGCUGCCUUUCAUGCCACUGGUGCUCCUUUGUGGCUAUGGACCAGUGGGGGGUGUAUUUCAAUCCUGUGCUUGUUUCUUUUUUGUCAGAGUUUCUUUG .........(((...(((....((((((.(((((((..(..((((((((((.((....))...))))).)))))...((((((((((....((((......((((....(......)...))))....))) ...-48.1
AB001535UGUGCAGAAUUGUACAGUUGCGAAACCAUGUCGCUGGCAGCUGGUGCUGGCGGUGGAGACUUCCCUGUGCGGUGCUCAGUGCAGCUGCACCCGUGGGGGAGGGAGCUCUUUCUCUGGCCCUGCAGUCA ...(((((......)))))...............((((((((((....))))...((((.((((((((((((((((((((....(((((((......(..((((....))))..)..(((((((.(.(((( ...-456.9
AB002292GGGGUCGCGGGGGACGCGGGGGACGCGGGGGACGGCGGGGAACGGCGGGGGACGGCGGGGAACAGCGGGGGACGGCGGGGAACAGCGGGGGACGGCGGGGAACAGCAGGGGACUGCGGGUCGCGUCCU ....((((((((((((((.((((((((((.(....).)))(((...(((.((((..((((((...(((((((((..((((((...((((((((.((((.(((.....((((....)))).((((.(.(((( ...-325.7

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.