Schema for orfeomeGenes
  Database: hg17    Primary Table: orfeomeGenes    Row Count: 33,983   Data last updated: 2018-10-16
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name KJ904234varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 4559int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 14750int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 4560int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 14749int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 11int(10) unsigned range Number of exons
exonStarts 4559,4832,5658,5769,6469,67...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 4692,4901,5768,5810,6631,69...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hg17.all_mrna.qName (via orfeomeGenes.name)
      hg17.altGraphX.mrnaRefs (via orfeomeGenes.name)
      hg17.dupSpMrna.dupMrnaID (via orfeomeGenes.name)
      hg17.dupSpMrna.mrnaID (via orfeomeGenes.name)
      hg17.mrnaOrientInfo.name (via orfeomeGenes.name)
      hg17.mrnaRefseq.mrna (via orfeomeGenes.name)
      hg17.orfeomeMrna.qName (via orfeomeGenes.name)
      hg17.spMrna.mrnaID (via orfeomeGenes.name)
      hgFixed.gbCdnaInfo.acc (via orfeomeGenes.name)
      hgFixed.gbSeq.acc (via orfeomeGenes.name)
      hgFixed.imageClone.acc (via orfeomeGenes.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
585KJ904234chr1-455914750456014749114559,4832,5658,5769,6469,6719,7095,7468,7777,8130,14600,4692,4901,5768,5810,6631,6918,7231,7605,7924,8242,14750,
585KJ901026chr1-456271734562717364562,4832,5658,6469,6719,7095,4692,4901,5810,6631,6918,7173,
585KJ905121chr1-25002255992559925599325002,25139,25583,25037,25344,25599,
587KJ903812chr1+3740183823303740183823303374018,382254,382316,374160,382312,382330,
588KJ899668chr1+4075214084584075214084581407521,408458,
590KJ899668chr1-6609606618976609606618971660960,661897,
590KJ903812chr1-6870896954166870896954163687089,687104,695274,687100,687165,695416,
591KJ901126chr1-8019448024358019448024341801944,802435,
73KJ905008chr1+9148309196759196759196758914830,916666,917658,917932,918081,918775,919220,919430,914983,916829,917774,918011,918581,918900,919331,919675,
592KJ898602chr1-92021793476492021893476319920217,920579,921040,921695,921924,923653,924012,926649,927522,927934,928697,929304,929526,931445,931617,932416,932621,934451,93 ...920323,920669,921176,921809,922068,923755,924126,926761,927662,928123,928811,929415,929605,931536,931738,932548,932796,934604,93 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.