Schema for orfeomeMrna
  Database: hg17    Primary Table: orfeomeMrna    Row Count: 33,983   Data last updated: 2018-10-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1376int(10) unsigned range Number of bases that match that aren't repeats
misMatches 20int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 11int(10) unsigned range Number of bases inserted in query
tNumInsert 10int(10) unsigned range Number of inserts in target
tBaseInsert 8795int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName KJ904234varchar(255) values Query sequence name
qSize 1536int(10) unsigned range Query sequence size
qStart 64int(10) unsigned range Alignment start position in query
qEnd 1471int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 245522847int(10) unsigned range Target sequence size
tStart 4559int(10) unsigned range Alignment start position in target
tEnd 14750int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 133,69,110,41,116,46,199,13...longblob   Size of each block
qStarts 65,198,267,379,420,545,591,...longblob   Start of each block in query.
tStarts 4559,4832,5658,5769,6469,65...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg17.all_mrna.qName (via orfeomeMrna.qName)
      hg17.altGraphX.mrnaRefs (via orfeomeMrna.qName)
      hg17.dupSpMrna.dupMrnaID (via orfeomeMrna.qName)
      hg17.dupSpMrna.mrnaID (via orfeomeMrna.qName)
      hg17.mrnaOrientInfo.name (via orfeomeMrna.qName)
      hg17.mrnaRefseq.mrna (via orfeomeMrna.qName)
      hg17.orfeomeGenes.name (via orfeomeMrna.qName)
      hg17.spMrna.mrnaID (via orfeomeMrna.qName)
      hgFixed.gbCdnaInfo.acc (via orfeomeMrna.qName)
      hgFixed.gbSeq.acc (via orfeomeMrna.qName)
      hgFixed.imageClone.acc (via orfeomeMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58513762000211108795-KJ9042341536641471chr124552284745591475012133,69,110,41,116,46,199,136,137,147,112,150,65,198,267,379,420,545,591,790,926,1063,1210,1322,4559,4832,5658,5769,6469,6585,6719,7095,7468,7777,8130,14600,
5857819001151821-KJ90102692465856chr1245522847456271737130,69,108,44,162,199,78,68,198,267,376,420,582,781,4562,4832,5658,5766,6469,6719,7095,
585256000112341-KJ90512139168325chr12455228472500225599435,62,143,16,66,101,164,307,25002,25139,25201,25583,
5872131000028098+KJ90381234868282chr12455228473740183823303142,58,14,68,210,268,374018,382254,382316,
5889361000000+KJ8996681071681005chr12455228474075214084581937,68,407521,
5909361000000-KJ8996681071681005chr12455228476609606618971937,66,660960,
5902131000028113-KJ90381234868282chr1245522847687089695416311,61,142,66,77,138,687089,687104,695274,
5914901000000-KJ90112662467558chr12455228478019448024351491,66,801944,
7314911005573353+KJ9050081625631560chr124552284791483091967513153,163,116,79,285,43,24,148,125,111,169,17,59,63,216,379,495,574,860,904,929,1077,1202,1313,1483,1501,914830,916666,917658,917932,918081,918366,918409,918433,918775,919220,919430,919599,919616,
5922246400001812297-KJ8986022379642314chr124552284792021793476419106,90,136,114,144,102,114,112,140,189,114,111,79,91,121,132,175,153,27,65,171,261,397,511,655,757,871,983,1123,1312,1426,1537,1616,1707,1828,1960,2135,2288,920217,920579,921040,921695,921924,923653,924012,926649,927522,927934,928697,929304,929526,931445,931617,932416,932621,934451,93 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.