Schema for xenoMrna
  Database: mm7    Primary Table: xenoMrna    Row Count: 6,621,118   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 608smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 42int(10) unsigned Number of bases that match that aren't repeats
misMatches 12int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName LE037241varchar(255) Query sequence name
qSize 333int(10) unsigned Query sequence size
qStart 79int(10) unsigned Alignment start position in query
qEnd 133int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 194923535int(10) unsigned Target sequence size
tStart 3118111int(10) unsigned Alignment start position in target
tEnd 3118165int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 54,longblob Size of each block
qStarts 79,longblob Start of each block in query.
tStarts 3118111,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      mm7.all_est.qName (via xenoMrna.qName)
      mm7.all_mrna.qName (via xenoMrna.qName)
      mm7.refGene.name (via xenoMrna.qName)
      mm7.refSeqAli.qName (via xenoMrna.qName)
      mm7.xenoRefFlat.name (via xenoMrna.qName)
      mm7.xenoRefGene.name (via xenoMrna.qName)
      mm7.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6084212000000++LE03724133379133chr119492353531181113118165154,79,3118111,
609469000000+-LE553720356132187chr119492353531642243164279155,132,191759256,
609312470066578703+-JU52404017046811697chr119492353531966143197676994,27,39,14,9,18,100,15,43,681,1244,1271,1324,1403,1440,1471,1571,1654,191725859,191726434,191726467,191726515,191726615,191726654,191726688,191726791,191726878,
609257550034014378+-JW48593315357301443chr119492353531967203197410543,73,10,135,51,730,1073,1197,1257,1392,191726125,191726431,191726572,191726628,191726764,
60950699008125491248+-AK05550924585992458chr1194923535319672831985811060,69,70,24,87,76,14,29,160,16,599,1084,1527,1631,1775,2102,2188,2242,2282,2442,191724954,191725448,191725883,191725988,191726130,191726434,191726515,191726589,191726628,191726791,
60915422000011+-JL976967490302478chr119492353532040173204194247,129,302,349,191719341,191719389,
6091808400248428801++LE26384578022770chr119492353532044663213531315,21,228,22,39,542,3204466,3204737,3213303,
60928259002513126++JU5391601427266658chr119492353532047053205172526,76,32,99,108,266,292,369,451,550,3204705,3204798,3204874,3204964,3205064,
6095030000118083++JO792186327170223chr119492353532047323222868223,30,170,193,3204732,3222838,
7666110011072282532++JP539779455106290chr119492353532047333487342316,36,25,106,122,265,3204733,3206591,3487317,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.