Schema for xenoRefFlat
  Database: mm7    Primary Table: xenoRefFlat    Row Count: 291,155   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName FUBP3varchar(255) values Name of gene as it appears in genome browser.
name NM_001244285varchar(255) values Name of gene
chrom chr2varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 31580153int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 31624831int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 31580180int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 31622936int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 24int(10) unsigned range Number of exons
exonStarts 31580153,31590465,31599773,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 31580264,31590571,31599807,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      mm7.xenoMrna.qName (via xenoRefFlat.name)
      mm7.xenoRefGene.name (via xenoRefFlat.name)
      mm7.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
FUBP3NM_001244285chr2+315801533162483131580180316229362431580153,31590465,31599773,31602153,31602560,31603904,31605848,31607763,31610524,31611924,31612553,31615391,31618889,31619804,31 ...31580264,31590571,31599807,31602203,31602632,31603962,31606011,31607865,31610626,31612027,31612650,31615537,31619052,31619867,31 ...
Entpd1NM_022587chr19+405536164063562740553675406330552040553616,40605108,40614482,40617112,40618947,40620047,40621313,40627692,40630779,40632848,40633591,40633645,40634220,40634594,40 ...40553691,40605236,40614600,40617260,40619110,40620284,40621574,40627816,40630910,40633556,40633636,40633810,40634575,40634686,40 ...
GPX1NM_001329455chr9+1080725751080735571080726461080734705108072575,108072646,108072667,108073110,108073512,108072593,108072663,108072754,108073480,108073557,
impdh1aNM_001002177chr6-291333432914431229133343291443121529133343,29134591,29134811,29135247,29135494,29136424,29136714,29137197,29138209,29138472,29139068,29139240,29141365,29144112,29 ...29133364,29134676,29134955,29135392,29135638,29136520,29136806,29137394,29138296,29138658,29139143,29139342,29141413,29144113,29 ...
Vom2r60NM_001099480chr7-381105613921247538110561392124751038110561,38239128,38240385,38317469,38319356,38636518,39071397,39071486,39212209,39212399,38111438,38239244,38240457,38317490,38319437,38636710,39071418,39071505,39212284,39212475,
Vom2r60NM_001099480chr8-449338645331904493386453319054493386,4493974,4501390,4532993,4533168,4493972,4494297,4501513,4533168,4533190,
LOC105038005NM_001319906chr2-1137883021137928441137883051137928448113788302,113788687,113788959,113790008,113790354,113791126,113792566,113792746,113788443,113788690,113789144,113790200,113790514,113791453,113792570,113792844,
UBE2V1NM_001282580chr2-1673584751673726601673584751673726152167358475,167372593,167358631,167372660,
UBE2V1NM_001282580chr3+61033536610338516103356061033851261033536,61033701,61033582,61033851,
UBE2V1NM_001282578chr6+945058799450760694506072945063451194505879,94506072,94506376,94506529,94506605,94506795,94507010,94507087,94507211,94507299,94507536,94506072,94506348,94506416,94506582,94506660,94506979,94507046,94507123,94507222,94507336,94507606,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.