Schema for all_est
  Database: papAnu2    Primary Table: all_est    Row Count: 153,057   Data last updated: 2016-07-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 966smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 472int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 23int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1986int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CV223666varchar(255) values Query sequence name
qSize 495int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 495int(10) unsigned range Alignment end position in query
tName chr14varchar(255) values Target sequence name
tSize 123829720int(10) unsigned range Target sequence size
tStart 50014217int(10) unsigned range Alignment start position in target
tEnd 50016698int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 98,138,259,longblob   Size of each block
qStarts 0,98,236,longblob   Start of each block in query.
tStarts 50014217,50015349,50016439,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      papAnu2.all_mrna.qName (via all_est.qName)
      papAnu2.estOrientInfo.name (via all_est.qName)
      papAnu2.intronEst.qName (via all_est.qName)
      papAnu2.refGene.name (via all_est.qName)
      papAnu2.refSeqAli.qName (via all_est.qName)
      papAnu2.xenoMrna.qName (via all_est.qName)
      papAnu2.xenoRefGene.name (via all_est.qName)
      papAnu2.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
96647202300021986+CV2236664950495chr141238297205001421750016698398,138,259,0,98,236,50014217,50015349,50016439,
58568127900048+EY2781097620762AHZZ011277241156048855655529,15,649,30,39,0,29,44,693,723,4885,4915,4931,5585,5616,
58566707100000+EY27648177941779AHZZ0112772411560491856561738,41,4918,
58590605701182091-EY2859829728972AHZZ01128619138114969802396,5,5,4,12,13,10,719,189,0,6,11,16,20,32,46,56,775,4969,4976,4982,4988,4993,5006,5022,5033,7834,
58568156300000+EY2813307578757AHZZ0113340911221068551749,8,106,
585588115100011+EY2838167400740AHZZ01133664146155712982718,22,0,718,557,1276,
5851380800000-EY2837997660146AHZZ0113366610427699151146,620,769,
58514102100000-EY2864294941163AHZZ0113366610428229841162,331,822,
58512912100000-EY2877918368159AHZZ0113366610428299801151,677,829,
58510602100000-EY2854677918135AHZZ0113366610428529791127,656,852,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.