Schema for xenoMrna
  Database: papAnu2    Primary Table: xenoMrna    Row Count: 7,810,842   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 44int(10) unsigned Number of bases that match that aren't repeats
misMatches 10int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName LE361416varchar(255) Query sequence name
qSize 349int(10) unsigned Query sequence size
qStart 260int(10) unsigned Alignment start position in query
qEnd 314int(10) unsigned Alignment end position in query
tName AHZZ01115065varchar(255) Target sequence name
tSize 44055int(10) unsigned Target sequence size
tStart 9033int(10) unsigned Alignment start position in target
tEnd 9087int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 54,longblob Size of each block
qStarts 260,longblob Start of each block in query.
tStarts 9033,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      papAnu2.all_est.qName (via xenoMrna.qName)
      papAnu2.all_mrna.qName (via xenoMrna.qName)
      papAnu2.refGene.name (via xenoMrna.qName)
      papAnu2.refSeqAli.qName (via xenoMrna.qName)
      papAnu2.xenoRefFlat.name (via xenoMrna.qName)
      papAnu2.xenoRefGene.name (via xenoMrna.qName)
      papAnu2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854410000000++LE361416349260314AHZZ011150654405590339087154,260,9033,
585826000000++CS26699488088AHZZ01115065440551659216680188,0,16592,
585826000000++DJ44275988088AHZZ01115065440551659216680188,0,16592,
585808000000++DJ44276988088AHZZ01115065440551659216680188,0,16592,
585826000000++DL07715688088AHZZ01115065440551659216680188,0,16592,
585826000000++DM00480688088AHZZ01115065440551659216680188,0,16592,
585808000000++DM17631388088AHZZ01115065440551659216680188,0,16592,
585826000000++EA61987888088AHZZ01115065440551659216680188,0,16592,
585808000000++EA61988888088AHZZ01115065440551659216680188,0,16592,
585808000000++FV52833888088AHZZ01115065440551659216680188,0,16592,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.