Schema for estOrientInfo
  Database: rn7    Primary Table: estOrientInfo    Row Count: 1,172,799   Data last updated: 2021-03-24
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 594smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 1294731int(10) unsigned Start position in chromosome
chromEnd 1295059int(10) unsigned End position in chromosome
name AA686370varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 1smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 8smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rn7.all_est.qName (via estOrientInfo.name)
      rn7.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
594chr112947311295059AA68637001080
595chr113830261383418AA96412500000
597chr115911001591490AA96412500000
599chr119496871950078AA96412500000
600chr120600322060966AA87492600000
600chr120600482060427AA859893000020
600chr120600742060408AA85030700000
600chr120612932061630AA851694000020
601chr121073112107700AA68604700000
601chr121074072107812AA68547700000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.