Schema for intronEst
  Database: rn7    Primary Table: intronEst    Row Count: 460,399   Data last updated: 2021-03-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 601smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 411int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 4284int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA925247varchar(255) values Query sequence name
qSize 428int(10) unsigned range Query sequence size
qStart 14int(10) unsigned range Alignment start position in query
qEnd 428int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 260522016int(10) unsigned range Target sequence size
tStart 2113051int(10) unsigned range Alignment start position in target
tEnd 2117749int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 285,129,longblob   Size of each block
qStarts 14,299,longblob   Start of each block in query.
tStarts 2113051,2117620,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      rn7.all_est.qName (via intronEst.qName)
      rn7.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6014113000014284+AA92524742814428chr1260522016211305121177492285,129,14,299,2113051,2117620,
60148420100523447-AA9433924870487chr126052201621201392144073622,83,105,32,105,140,0,22,105,210,242,347,2120139,2120162,2123192,2126259,2127684,2143933,
60147538000523447-AA9433914860486chr126052201621201752144108670,105,32,105,149,25,0,70,175,207,312,461,2120175,2123192,2126259,2127684,2143933,2144083,
601367015000320499-AA9004103820382chr126052201621232342144115463,32,105,182,0,63,95,200,2123234,2126259,2127684,2143933,
6015241000045078+AA95613953813538chr126052201621485882154191563,78,181,136,67,13,76,154,335,471,2148588,2149611,2150495,2152683,2154124,
642527200001193+AA8910425420529chr1260522016756567175663932397,132,0,397,7565671,7566261,
642519301003806-AA8014135230523chr1260522016756581175671404257,201,53,12,0,257,458,511,7565811,7566261,7566791,7567128,
64549330000313367+AA96430751115511chr1260522016791311779269804207,97,123,69,15,222,319,442,7913117,7916056,7925776,7926911,
6464820021116291+AA92411251816501chr1260522016804676680535413187,132,165,16,204,336,8046766,8046953,8053376,
6536315000028683+AA9440166360636chr1260522016903286890421873498,87,51,0,498,585,9032868,9037240,9042136,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.