Schema for flyBaseCanonical
  Database: dm3    Primary Table: flyBaseCanonical    Row Count: 13,784   Data last updated: 2008-10-24
Format description: Describes the canonical splice variant of a gene
On download server: MariaDB table dump directory
fieldexampleSQL type info description
chrom chrMvarchar(255) values Chromosome
chromStart 239int(11) range Start position (0 based). Represents transcription start for + strand genes, end for - strand genes
chromEnd 1265int(11) range End position (non-inclusive). Represents transcription end for + strand genes, start for - strand genes
clusterId 1int(10) unsigned range Which cluster of transcripts this belongs to in knownIsoforms
transcript CG34063-RAvarchar(255) values Corresponds to knownGene name field.
protein n/avarchar(255) values Accession of the associated protein, or UCSC ID in newer tables.

Connected Tables and Joining Fields
        dm3.arbExpDistance.query (via flyBaseCanonical.transcript)
      dm3.arbExpDistance.target (via flyBaseCanonical.transcript)
      dm3.ceBlastTab.query (via flyBaseCanonical.transcript)
      dm3.drBlastTab.query (via flyBaseCanonical.transcript)
      dm3.flyBase2004Xref.name (via flyBaseCanonical.transcript)
      dm3.flyBaseBlastTab.query (via flyBaseCanonical.transcript)
      dm3.flyBaseBlastTab.target (via flyBaseCanonical.transcript)
      dm3.flyBaseGene.name (via flyBaseCanonical.transcript)
      dm3.flyBaseIsoforms.transcript (via flyBaseCanonical.transcript)
      dm3.flyBaseNoncoding.name (via flyBaseCanonical.transcript)
      dm3.flyBasePep.name (via flyBaseCanonical.transcript)
      dm3.flyBaseToCG.name (via flyBaseCanonical.transcript)
      dm3.flyBaseToDescription.name (via flyBaseCanonical.transcript)
      dm3.flyBaseToPfam.name (via flyBaseCanonical.transcript)
      dm3.flyBaseToRefSeq.name (via flyBaseCanonical.transcript)
      dm3.flyBaseToUniProt.name (via flyBaseCanonical.transcript)
      dm3.flyP2P.query (via flyBaseCanonical.transcript)
      dm3.flyP2P.target (via flyBaseCanonical.transcript)
      dm3.hgBlastTab.query (via flyBaseCanonical.transcript)
      dm3.mmBlastTab.query (via flyBaseCanonical.transcript)
      dm3.rnBlastTab.query (via flyBaseCanonical.transcript)
      dm3.scBlastTab.query (via flyBaseCanonical.transcript)

Sample Rows
 
chromchromStartchromEndclusterIdtranscriptprotein
chrM23912651CG34063-RAn/a
chrM147330092CG34067-RAn/a
chrM308237673CG34069-RAn/a
chrM473555244CG34074-RAn/a
chrM560759615CG34076-RAn/a
chrM9969104946CG34089-RAn/a
chrM10497116347CG34090-RAn/a
chrM640181248CG34083-RAn/a
chrM820595449CG34085-RAn/a
chrM117191265810CG34092-RAn/a

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.