Schema for all_mrna
  Database: gasAcu1    Primary Table: all_mrna    Row Count: 2,721   Data last updated: 2018-07-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1568int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 3int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 8int(10) unsigned range Number of inserts in target
tBaseInsert 3522int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BT027618varchar(255) values Query sequence name
qSize 1614int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1573int(10) unsigned range Alignment end position in query
tName chrIvarchar(255) values Target sequence name
tSize 28185914int(10) unsigned range Target sequence size
tStart 69454int(10) unsigned range Alignment start position in target
tEnd 74548int(10) unsigned range Alignment end position in target
blockCount 10int(10) unsigned range Number of blocks in alignment
blockSizes 225,285,98,102,71,150,220,1...longblob   Size of each block
qStarts 41,267,552,650,752,823,973,...longblob   Start of each block in query.
tStarts 69454,69679,70608,70792,721...longblob   Start of each block in target.

Connected Tables and Joining Fields
        gasAcu1.all_est.qName (via all_mrna.qName)
      gasAcu1.mrnaOrientInfo.name (via all_mrna.qName)
      gasAcu1.refGene.name (via all_mrna.qName)
      gasAcu1.refSeqAli.qName (via all_mrna.qName)
      gasAcu1.xenoMrna.qName (via all_mrna.qName)
      gasAcu1.xenoRefGene.name (via all_mrna.qName)
      gasAcu1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58515681301183522-BT027618161401573chrI28185914694547454810225,285,98,102,71,150,220,141,217,63,41,267,552,650,752,823,973,1193,1334,1551,69454,69679,70608,70792,72166,72309,73022,73419,73631,74485,
586381000001762+KT2357563810381chrI281859141463691475122177,204,0,177,146369,147308,
5863600000024472+KT2357483600360chrI28185914150454155286382,62,216,0,82,144,150454,153237,155070,
58640117000011771+BT0279214990472chrI281859141531641554072135,337,0,135,153164,155070,
586121712300075449+BT028683126501241chrI28185914200011206701868,191,65,106,72,174,162,403,0,68,259,324,430,502,676,838,200011,202221,202480,203867,204339,204740,206062,206298,
5867280000021227+AB910027847119847chrI281859142047402066953174,162,392,119,293,455,204740,206062,206303,
587215332004910814-BT027499224802194chrI281859143562303592291417,45,89,723,135,423,55,74,58,123,12,30,188,213,54,71,119,208,931,1066,1492,1547,1621,1681,1804,1816,1847,2035,356230,356279,356324,356427,357520,357960,358385,358492,358571,358629,358756,358779,358809,359016,
587615200003761-AY1843586220617chrI281859143569073582854243,135,161,78,5,248,383,544,356907,357520,357960,358207,
58713231300143336+BT028722136901340chrI281859143802733819455304,181,96,114,641,0,304,485,581,699,380273,380755,381012,381190,381304,
5882004447000163994+BT027424207902055chrI281859144750174810661714,70,72,119,100,83,74,145,117,157,85,333,102,114,66,158,246,0,14,84,156,275,375,458,532,677,794,951,1036,1369,1471,1585,1651,1809,475017,475703,475863,476012,476263,476447,476598,476749,477023,477442,477719,478566,479009,479256,480424,480654,480820,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.