Schema for estOrientInfo
  Database: gasAcu1    Primary Table: estOrientInfo    Row Count: 302,194   Data last updated: 2016-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 13364int(10) unsigned range Start position in chromosome
chromEnd 14559int(10) unsigned range End position in chromosome
name CD500210varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        gasAcu1.all_est.qName (via estOrientInfo.name)
      gasAcu1.est.qName (via estOrientInfo.name)
      gasAcu1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrI1336414559CD50021000000
585chrI1370614768CD50020900000
585chrI4123542271CD49978502000
586chrI163675172088CD50490452000
586chrI200005203933CD49932636300
586chrI202382206669CD499327-50200
587chrI356910359228CD4933093170400
587chrI356923359227CD493310-30000
587chrI384884387891CD506482-51300
587chrI384998389459CD50648181000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.