Schema for foldUtr5
  Database: hg18    Primary Table: foldUtr5    Row Count: 49,267   Data last updated: 2009-03-05
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc001aav.2varchar(255) values mRNA accession
seq CUCCCGGCUGCAUCUCCAGGCCGGACU...longblob   mRNA sequence (U's instead of T's)
fold .....(((((((..........((((....longblob   Parenthesis and .'s that describe folding
energy -66.5float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via foldUtr5.name)
      hg18.ccdsKgMap.geneId (via foldUtr5.name)
      hg18.ceBlastTab.query (via foldUtr5.name)
      hg18.dmBlastTab.query (via foldUtr5.name)
      hg18.drBlastTab.query (via foldUtr5.name)
      hg18.foldUtr3.name (via foldUtr5.name)
      hg18.gnfAtlas2Distance.query (via foldUtr5.name)
      hg18.gnfAtlas2Distance.target (via foldUtr5.name)
      hg18.gnfU95Distance.query (via foldUtr5.name)
      hg18.gnfU95Distance.target (via foldUtr5.name)
      hg18.humanHprdP2P.query (via foldUtr5.name)
      hg18.humanHprdP2P.target (via foldUtr5.name)
      hg18.humanVidalP2P.query (via foldUtr5.name)
      hg18.humanVidalP2P.target (via foldUtr5.name)
      hg18.humanWankerP2P.query (via foldUtr5.name)
      hg18.humanWankerP2P.target (via foldUtr5.name)
      hg18.keggPathway.kgID (via foldUtr5.name)
      hg18.kgAlias.kgID (via foldUtr5.name)
      hg18.kgColor.kgID (via foldUtr5.name)
      hg18.kgProtAlias.kgID (via foldUtr5.name)
      hg18.kgProtMap2.qName (via foldUtr5.name)
      hg18.kgSpAlias.kgID (via foldUtr5.name)
      hg18.kgTargetAli.qName (via foldUtr5.name)
      hg18.kgTxInfo.name (via foldUtr5.name)
      hg18.kgXref.kgID (via foldUtr5.name)
      hg18.knownBlastTab.query (via foldUtr5.name)
      hg18.knownBlastTab.target (via foldUtr5.name)
      hg18.knownCanonToDecipher.name (via foldUtr5.name)
      hg18.knownCanonical.protein (via foldUtr5.name)
      hg18.knownCanonical.transcript (via foldUtr5.name)
      hg18.knownGene.name (via foldUtr5.name)
      hg18.knownGeneMrna.name (via foldUtr5.name)
      hg18.knownGenePep.name (via foldUtr5.name)
      hg18.knownIsoforms.transcript (via foldUtr5.name)
      hg18.knownToAllenBrain.name (via foldUtr5.name)
      hg18.knownToDecipher.name (via foldUtr5.name)
      hg18.knownToEnsembl.name (via foldUtr5.name)
      hg18.knownToGnf1h.name (via foldUtr5.name)
      hg18.knownToGnfAtlas2.name (via foldUtr5.name)
      hg18.knownToHInv.name (via foldUtr5.name)
      hg18.knownToHprd.name (via foldUtr5.name)
      hg18.knownToKeggEntrez.name (via foldUtr5.name)
      hg18.knownToLocusLink.name (via foldUtr5.name)
      hg18.knownToMupit.name (via foldUtr5.name)
      hg18.knownToPfam.name (via foldUtr5.name)
      hg18.knownToRefSeq.name (via foldUtr5.name)
      hg18.knownToSuper.gene (via foldUtr5.name)
      hg18.knownToTreefam.name (via foldUtr5.name)
      hg18.knownToU133.name (via foldUtr5.name)
      hg18.knownToU133Plus2.name (via foldUtr5.name)
      hg18.knownToU95.name (via foldUtr5.name)
      hg18.knownToVisiGene.name (via foldUtr5.name)
      hg18.mmBlastTab.query (via foldUtr5.name)
      hg18.rnBlastTab.query (via foldUtr5.name)
      hg18.scBlastTab.query (via foldUtr5.name)
      hg18.ucscScop.ucscId (via foldUtr5.name)
      knownGeneV39.bioCycPathway.kgID (via foldUtr5.name)
      knownGeneV39.ceBlastTab.query (via foldUtr5.name)
      knownGeneV39.dmBlastTab.query (via foldUtr5.name)
      knownGeneV39.drBlastTab.query (via foldUtr5.name)
      knownGeneV39.foldUtr3.name (via foldUtr5.name)
      knownGeneV39.foldUtr5.name (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr5.name)
      knownGeneV39.kgAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgColor.kgID (via foldUtr5.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr5.name)
      knownGeneV39.kgXref.kgID (via foldUtr5.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr5.name)
      knownGeneV39.knownBlastTab.query (via foldUtr5.name)
      knownGeneV39.knownBlastTab.target (via foldUtr5.name)
      knownGeneV39.knownCanonical.protein (via foldUtr5.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr5.name)
      knownGeneV39.knownCds.name (via foldUtr5.name)
      knownGeneV39.knownGene.name (via foldUtr5.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr5.name)
      knownGeneV39.knownGenePep.name (via foldUtr5.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr5.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr5.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr5.name)
      knownGeneV39.knownToHprd.name (via foldUtr5.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr5.name)
      knownGeneV39.knownToMrna.name (via foldUtr5.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr5.name)
      knownGeneV39.knownToMupit.name (via foldUtr5.name)
      knownGeneV39.knownToPfam.name (via foldUtr5.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr5.name)
      knownGeneV39.knownToSuper.gene (via foldUtr5.name)
      knownGeneV39.knownToTag.name (via foldUtr5.name)
      knownGeneV39.knownToU133.name (via foldUtr5.name)
      knownGeneV39.knownToU95.name (via foldUtr5.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr5.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr5.name)
      knownGeneV39.mmBlastTab.query (via foldUtr5.name)
      knownGeneV39.rnBlastTab.query (via foldUtr5.name)
      knownGeneV39.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr5.name)

Sample Rows
 
nameseqfoldenergy
uc001aav.2CUCCCGGCUGCAUCUCCAGGCCGGACUCUGGCCCGACUCCAGGUCCCAACAACGUCUUUGGACUCAGCUCCUGCCCAGCUCCCAGCGGCCCUGGUAGGCCCACAACUUCCCUAAGCCAAGCUCCCCAG ........(((((((..........((((.((((.......)))))))).......(((.(((((...((((.......)))).((((.((((((((.(((((.((..(...(((.(((...(((.....) ...-66.5
uc001abe.2UUUAGGCCAAGCUCAUGCUUCACAAGGGCCUUUCCAGGCCCAACUUUUGUCUCAUGGCAACCUUCCCUGGCCAGAUUCCUGCCUGUCUCCCAGCAGCCUAGACAGGCCCAGGUCUUGCCUCACACUGG ......(((((.((((.(((........((((((....)))))).....(((((....)))))........((((((......((((((((...........))))))))..(((.....)))....)))) ...-76
uc001abv.1CAGCGCUUGGGGCUCGCGGGCCGCUCCCUCCGCUCGGAAGGGAAAAGUCUGAAGACGCUU.(((((((.(((((.(((...)))(((((((....)).)))))..))))).))).)))).-24.3
uc001abw.1GCAGAUCCCUGCGGCGUUCGCGAGGGUGGGACGGGAAGCGGGCUGGGAAGUCGGGCCGAGGGAAAAGUCUGAAGACGCUU.(((((((((.((((.(((.((.........)).)))...((((....))))..)))))))))....)))).........-25.2
uc001abx.1CCAGGACGGCAACCUUCCCACCCUCAUAUCCAGCGUCCACCGCAGCCGCCACCUCGUU...((.((((.........(......).....(((.....))).))))))........-9.3
uc001aby.2GUGGCUCACGCCUGUAAUGCCAGCACUUUGGGAGGCCGAGGCGGGCAGAUUACCUGAGGUCAGGAAUUCGAGACCAGCCUGACCAACACGGAAAAAUCAUGUCUCUACUAAAAAUAUAAAAAUUAGCC ...((((((.((.(((((..((((.((.((..(((..((....)).(((......(((((((((.((((.((....(((((((..(((((........((((((((((((((...............(((( ...-847.62
uc001abz.2GUGCGCAGCCGCGCGGCAUUCUGGGGCCGGAAGUGGGGUGCACGCUUCGGGUUGGUGUC((((((..((((.((((........))))...)))).)))))).(....).........-23.5
uc001aca.1AGUGAGCGACACAGAGCGGGCCGCCACCGCCGAGCAGCCCUCCGGCAGUCUCCGCGUCCGUUAAGCCCGCGGGUCCUCCGCGAAUCGGCGGUGGGUCCGGCAGCCGA.(((.....))).(.((..((((((((((((((...((.....((.((..((((((..(.....)..))))))..))))))...))))))))))...)))).)))..-48.5
uc001acb.1CGGCCUCCUGUGCGACAUCGUCCUGCACGUGGCUGCCAAGGAGAUCCGUGCGCACAAAGUGGUGCUGGCCUCCUGCAGCCCCUACUUCCACGCCAUGUUCACAAGCAAGUACCCGCCUGGGCGGCGCU ....(((.....(((((((...)))..))))..((((((..(((((..(.(..(.(((...))))..).)..)))))))))))...........)))....(((...........((((....)))).((. ...-75.2
uc001acd.1GGGACCCAGACUUGCCGACCUGUACGACUCUGGCC.....(((((.(((..........))).)))))..-6.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.