Schema for knownCanonical
  Database: hg18    Primary Table: knownCanonical    Row Count: 26,570   Data last updated: 2009-03-03
Format description: Describes the canonical splice variant of a gene
On download server: MariaDB table dump directory
fieldexampleSQL type info description
chrom chr1varchar(255) values Chromosome
chromStart 1115int(11) range Start position (0 based). Represents transcription start for + strand genes, end for - strand genes
chromEnd 4272int(11) range End position (non-inclusive). Represents transcription end for + strand genes, start for - strand genes
clusterId 1int(11) range Which cluster of transcripts this belongs to in knownIsoforms
transcript uc009vip.1varchar(255) values Corresponds to knownGene name field.
protein uc009vip.1varchar(255) values Accession of the associated protein, or UCSC ID in newer tables.

Connected Tables and Joining Fields
        hg18.knownIsoforms.clusterId (via knownCanonical.clusterId)
      knownGeneV39.knownCanonical.clusterId (via knownCanonical.clusterId)
      knownGeneV39.knownIsoforms.clusterId (via knownCanonical.clusterId)
      hg18.bioCycPathway.kgID (via knownCanonical.transcript)
      hg18.ccdsKgMap.geneId (via knownCanonical.transcript)
      hg18.ceBlastTab.query (via knownCanonical.transcript)
      hg18.dmBlastTab.query (via knownCanonical.transcript)
      hg18.drBlastTab.query (via knownCanonical.transcript)
      hg18.foldUtr3.name (via knownCanonical.transcript)
      hg18.foldUtr5.name (via knownCanonical.transcript)
      hg18.gnfAtlas2Distance.query (via knownCanonical.transcript)
      hg18.gnfAtlas2Distance.target (via knownCanonical.transcript)
      hg18.gnfU95Distance.query (via knownCanonical.transcript)
      hg18.gnfU95Distance.target (via knownCanonical.transcript)
      hg18.humanHprdP2P.query (via knownCanonical.transcript)
      hg18.humanHprdP2P.target (via knownCanonical.transcript)
      hg18.humanVidalP2P.query (via knownCanonical.transcript)
      hg18.humanVidalP2P.target (via knownCanonical.transcript)
      hg18.humanWankerP2P.query (via knownCanonical.transcript)
      hg18.humanWankerP2P.target (via knownCanonical.transcript)
      hg18.keggPathway.kgID (via knownCanonical.transcript)
      hg18.kgAlias.kgID (via knownCanonical.transcript)
      hg18.kgColor.kgID (via knownCanonical.transcript)
      hg18.kgProtAlias.kgID (via knownCanonical.transcript)
      hg18.kgProtMap2.qName (via knownCanonical.transcript)
      hg18.kgSpAlias.kgID (via knownCanonical.transcript)
      hg18.kgTargetAli.qName (via knownCanonical.transcript)
      hg18.kgTxInfo.name (via knownCanonical.transcript)
      hg18.kgXref.kgID (via knownCanonical.transcript)
      hg18.knownBlastTab.query (via knownCanonical.transcript)
      hg18.knownBlastTab.target (via knownCanonical.transcript)
      hg18.knownCanonToDecipher.name (via knownCanonical.transcript)
      hg18.knownGene.name (via knownCanonical.transcript)
      hg18.knownGeneMrna.name (via knownCanonical.transcript)
      hg18.knownGenePep.name (via knownCanonical.transcript)
      hg18.knownIsoforms.transcript (via knownCanonical.transcript)
      hg18.knownToAllenBrain.name (via knownCanonical.transcript)
      hg18.knownToDecipher.name (via knownCanonical.transcript)
      hg18.knownToEnsembl.name (via knownCanonical.transcript)
      hg18.knownToGnf1h.name (via knownCanonical.transcript)
      hg18.knownToGnfAtlas2.name (via knownCanonical.transcript)
      hg18.knownToHInv.name (via knownCanonical.transcript)
      hg18.knownToHprd.name (via knownCanonical.transcript)
      hg18.knownToKeggEntrez.name (via knownCanonical.transcript)
      hg18.knownToLocusLink.name (via knownCanonical.transcript)
      hg18.knownToMupit.name (via knownCanonical.transcript)
      hg18.knownToPfam.name (via knownCanonical.transcript)
      hg18.knownToRefSeq.name (via knownCanonical.transcript)
      hg18.knownToSuper.gene (via knownCanonical.transcript)
      hg18.knownToTreefam.name (via knownCanonical.transcript)
      hg18.knownToU133.name (via knownCanonical.transcript)
      hg18.knownToU133Plus2.name (via knownCanonical.transcript)
      hg18.knownToU95.name (via knownCanonical.transcript)
      hg18.knownToVisiGene.name (via knownCanonical.transcript)
      hg18.mmBlastTab.query (via knownCanonical.transcript)
      hg18.rnBlastTab.query (via knownCanonical.transcript)
      hg18.scBlastTab.query (via knownCanonical.transcript)
      hg18.ucscScop.ucscId (via knownCanonical.transcript)
      knownGeneV39.bioCycPathway.kgID (via knownCanonical.transcript)
      knownGeneV39.ceBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.dmBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.drBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.foldUtr3.name (via knownCanonical.transcript)
      knownGeneV39.foldUtr5.name (via knownCanonical.transcript)
      knownGeneV39.gnfAtlas2Distance.query (via knownCanonical.transcript)
      knownGeneV39.gnfAtlas2Distance.target (via knownCanonical.transcript)
      knownGeneV39.kgAlias.kgID (via knownCanonical.transcript)
      knownGeneV39.kgColor.kgID (via knownCanonical.transcript)
      knownGeneV39.kgProtAlias.kgID (via knownCanonical.transcript)
      knownGeneV39.kgSpAlias.kgID (via knownCanonical.transcript)
      knownGeneV39.kgTargetAli.qName (via knownCanonical.transcript)
      knownGeneV39.kgXref.kgID (via knownCanonical.transcript)
      knownGeneV39.knownAttrs.kgID (via knownCanonical.transcript)
      knownGeneV39.knownBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.knownBlastTab.target (via knownCanonical.transcript)
      knownGeneV39.knownCanonical.protein (via knownCanonical.transcript)
      knownGeneV39.knownCanonical.transcript (via knownCanonical.transcript)
      knownGeneV39.knownCds.name (via knownCanonical.transcript)
      knownGeneV39.knownGene.name (via knownCanonical.transcript)
      knownGeneV39.knownGeneMrna.name (via knownCanonical.transcript)
      knownGeneV39.knownGenePep.name (via knownCanonical.transcript)
      knownGeneV39.knownIsoforms.transcript (via knownCanonical.transcript)
      knownGeneV39.knownToEnsembl.name (via knownCanonical.transcript)
      knownGeneV39.knownToGnfAtlas2.name (via knownCanonical.transcript)
      knownGeneV39.knownToHprd.name (via knownCanonical.transcript)
      knownGeneV39.knownToLocusLink.name (via knownCanonical.transcript)
      knownGeneV39.knownToMrna.name (via knownCanonical.transcript)
      knownGeneV39.knownToMrnaSingle.name (via knownCanonical.transcript)
      knownGeneV39.knownToMupit.name (via knownCanonical.transcript)
      knownGeneV39.knownToPfam.name (via knownCanonical.transcript)
      knownGeneV39.knownToRefSeq.name (via knownCanonical.transcript)
      knownGeneV39.knownToSuper.gene (via knownCanonical.transcript)
      knownGeneV39.knownToTag.name (via knownCanonical.transcript)
      knownGeneV39.knownToU133.name (via knownCanonical.transcript)
      knownGeneV39.knownToU95.name (via knownCanonical.transcript)
      knownGeneV39.knownToVisiGene.name (via knownCanonical.transcript)
      knownGeneV39.knownToWikipedia.name (via knownCanonical.transcript)
      knownGeneV39.mmBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.rnBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.scBlastTab.query (via knownCanonical.transcript)
      knownGeneV39.ucscScop.ucscId (via knownCanonical.transcript)

Sample Rows
 
chromchromStartchromEndclusterIdtranscriptprotein
chr1111542721uc009vip.1uc009vip.1
chr14269192212uc009viw.1uc009viw.1
chr119417209573uc009vjg.1uc009vjg.1
chr124475259404uc001aak.1uc001aak.1
chr158953598715uc001aal.1uc001aal.1
chr1791577354136uc009vji.1uc009vji.1
chr11247791263517uc009vjj.1uc009vjj.1
chr11275861285588uc001aam.2uc001aam.2
chr11293671294289uc001aap.1uc001aap.1
chr131094631097710uc001aaq.1uc001aaq.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.