Schema for humanVidalP2P
  Database: hg38    Primary Table: humanVidalP2P    Row Count: 1,381,952   Data last updated: 2024-08-19
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query ENST00000348343.11varchar(255) Query gene. Indexed
target ENST00000348343.11varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via humanVidalP2P.query)
      hg38.ccdsKgMap.geneId (via humanVidalP2P.query)
      hg38.ceBlastTab.query (via humanVidalP2P.query)
      hg38.dmBlastTab.query (via humanVidalP2P.query)
      hg38.drBlastTab.query (via humanVidalP2P.query)
      hg38.foldUtr3.name (via humanVidalP2P.query)
      hg38.foldUtr5.name (via humanVidalP2P.query)
      hg38.gnfAtlas2Distance.query (via humanVidalP2P.query)
      hg38.gnfAtlas2Distance.target (via humanVidalP2P.query)
      hg38.gnfU95Distance.query (via humanVidalP2P.query)
      hg38.gnfU95Distance.target (via humanVidalP2P.query)
      hg38.humanHprdP2P.query (via humanVidalP2P.query)
      hg38.humanHprdP2P.target (via humanVidalP2P.query)
      hg38.humanWankerP2P.query (via humanVidalP2P.query)
      hg38.humanWankerP2P.target (via humanVidalP2P.query)
      hg38.keggPathway.kgID (via humanVidalP2P.query)
      hg38.kgAlias.kgID (via humanVidalP2P.query)
      hg38.kgColor.kgID (via humanVidalP2P.query)
      hg38.kgProtAlias.kgID (via humanVidalP2P.query)
      hg38.kgSpAlias.kgID (via humanVidalP2P.query)
      hg38.kgTargetAli.qName (via humanVidalP2P.query)
      hg38.kgXref.kgID (via humanVidalP2P.query)
      hg38.knownAttrs.kgID (via humanVidalP2P.query)
      hg38.knownBlastTab.query (via humanVidalP2P.query)
      hg38.knownBlastTab.target (via humanVidalP2P.query)
      hg38.knownCanonical.transcript (via humanVidalP2P.query)
      hg38.knownCds.name (via humanVidalP2P.query)
      hg38.knownGene.name (via humanVidalP2P.query)
      hg38.knownGeneMrna.name (via humanVidalP2P.query)
      hg38.knownGenePep.name (via humanVidalP2P.query)
      hg38.knownIsoforms.transcript (via humanVidalP2P.query)
      hg38.knownToEnsembl.name (via humanVidalP2P.query)
      hg38.knownToGnfAtlas2.name (via humanVidalP2P.query)
      hg38.knownToHprd.name (via humanVidalP2P.query)
      hg38.knownToKeggEntrez.name (via humanVidalP2P.query)
      hg38.knownToLocusLink.name (via humanVidalP2P.query)
      hg38.knownToLynx.name (via humanVidalP2P.query)
      hg38.knownToMrna.name (via humanVidalP2P.query)
      hg38.knownToMrnaSingle.name (via humanVidalP2P.query)
      hg38.knownToMupit.name (via humanVidalP2P.query)
      hg38.knownToNextProt.name (via humanVidalP2P.query)
      hg38.knownToPfam.name (via humanVidalP2P.query)
      hg38.knownToRefSeq.name (via humanVidalP2P.query)
      hg38.knownToSuper.gene (via humanVidalP2P.query)
      hg38.knownToTag.name (via humanVidalP2P.query)
      hg38.knownToU133.name (via humanVidalP2P.query)
      hg38.knownToU95.name (via humanVidalP2P.query)
      hg38.knownToVisiGene.name (via humanVidalP2P.query)
      hg38.knownToWikipedia.name (via humanVidalP2P.query)
      hg38.mmBlastTab.query (via humanVidalP2P.query)
      hg38.rnBlastTab.query (via humanVidalP2P.query)
      hg38.scBlastTab.query (via humanVidalP2P.query)
      hg38.ucscScop.ucscId (via humanVidalP2P.query)
      knownGeneV39.bioCycPathway.kgID (via humanVidalP2P.query)
      knownGeneV39.ceBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.dmBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.drBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.foldUtr3.name (via humanVidalP2P.query)
      knownGeneV39.foldUtr5.name (via humanVidalP2P.query)
      knownGeneV39.gnfAtlas2Distance.query (via humanVidalP2P.query)
      knownGeneV39.gnfAtlas2Distance.target (via humanVidalP2P.query)
      knownGeneV39.kgAlias.kgID (via humanVidalP2P.query)
      knownGeneV39.kgColor.kgID (via humanVidalP2P.query)
      knownGeneV39.kgProtAlias.kgID (via humanVidalP2P.query)
      knownGeneV39.kgSpAlias.kgID (via humanVidalP2P.query)
      knownGeneV39.kgTargetAli.qName (via humanVidalP2P.query)
      knownGeneV39.kgXref.kgID (via humanVidalP2P.query)
      knownGeneV39.knownAttrs.kgID (via humanVidalP2P.query)
      knownGeneV39.knownBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.knownBlastTab.target (via humanVidalP2P.query)
      knownGeneV39.knownCanonical.protein (via humanVidalP2P.query)
      knownGeneV39.knownCanonical.transcript (via humanVidalP2P.query)
      knownGeneV39.knownCds.name (via humanVidalP2P.query)
      knownGeneV39.knownGene.name (via humanVidalP2P.query)
      knownGeneV39.knownGeneMrna.name (via humanVidalP2P.query)
      knownGeneV39.knownGenePep.name (via humanVidalP2P.query)
      knownGeneV39.knownIsoforms.transcript (via humanVidalP2P.query)
      knownGeneV39.knownToEnsembl.name (via humanVidalP2P.query)
      knownGeneV39.knownToGnfAtlas2.name (via humanVidalP2P.query)
      knownGeneV39.knownToHprd.name (via humanVidalP2P.query)
      knownGeneV39.knownToLocusLink.name (via humanVidalP2P.query)
      knownGeneV39.knownToMrna.name (via humanVidalP2P.query)
      knownGeneV39.knownToMrnaSingle.name (via humanVidalP2P.query)
      knownGeneV39.knownToMupit.name (via humanVidalP2P.query)
      knownGeneV39.knownToPfam.name (via humanVidalP2P.query)
      knownGeneV39.knownToRefSeq.name (via humanVidalP2P.query)
      knownGeneV39.knownToSuper.gene (via humanVidalP2P.query)
      knownGeneV39.knownToTag.name (via humanVidalP2P.query)
      knownGeneV39.knownToU133.name (via humanVidalP2P.query)
      knownGeneV39.knownToU95.name (via humanVidalP2P.query)
      knownGeneV39.knownToVisiGene.name (via humanVidalP2P.query)
      knownGeneV39.knownToWikipedia.name (via humanVidalP2P.query)
      knownGeneV39.mmBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.rnBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.scBlastTab.query (via humanVidalP2P.query)
      knownGeneV39.ucscScop.ucscId (via humanVidalP2P.query)

Sample Rows
 
querytargetdistance
ENST00000348343.11ENST00000348343.110
ENST00000348343.11ENST00000342014.60
ENST00000342014.6ENST00000348343.110
ENST00000342014.6ENST00000342014.60
ENST00000348343.11ENST00000639909.21
ENST00000348343.11ENST00000639436.11
ENST00000348343.11ENST00000639102.11
ENST00000348343.11ENST00000437570.61
ENST00000348343.11ENST00000393438.61
ENST00000348343.11ENST00000319449.91

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.