Schema for rnBlastTab
  Database: mm7    Primary Table: rnBlastTab    Row Count: 8,603   Data last updated: 2007-02-12
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB003147varchar(255) values Name of sequence in this assembly (query)
target AB003104varchar(255) values Name of sequence in other assembly (target)
identity 90.37float range Percent identity
aliLength 623int(10) unsigned range Length of alignment
mismatch 53int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 622int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 617int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 943double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via rnBlastTab.query)
      knownGeneV39.ceBlastTab.query (via rnBlastTab.query)
      knownGeneV39.dmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.drBlastTab.query (via rnBlastTab.query)
      knownGeneV39.foldUtr3.name (via rnBlastTab.query)
      knownGeneV39.foldUtr5.name (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via rnBlastTab.query)
      knownGeneV39.kgAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgColor.kgID (via rnBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via rnBlastTab.query)
      knownGeneV39.kgXref.kgID (via rnBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.query (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.target (via rnBlastTab.query)
      knownGeneV39.knownCanonical.protein (via rnBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via rnBlastTab.query)
      knownGeneV39.knownCds.name (via rnBlastTab.query)
      knownGeneV39.knownGene.name (via rnBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via rnBlastTab.query)
      knownGeneV39.knownGenePep.name (via rnBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via rnBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via rnBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via rnBlastTab.query)
      knownGeneV39.knownToHprd.name (via rnBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via rnBlastTab.query)
      knownGeneV39.knownToMrna.name (via rnBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via rnBlastTab.query)
      knownGeneV39.knownToMupit.name (via rnBlastTab.query)
      knownGeneV39.knownToPfam.name (via rnBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via rnBlastTab.query)
      knownGeneV39.knownToSuper.gene (via rnBlastTab.query)
      knownGeneV39.knownToTag.name (via rnBlastTab.query)
      knownGeneV39.knownToU133.name (via rnBlastTab.query)
      knownGeneV39.knownToU95.name (via rnBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via rnBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via rnBlastTab.query)
      knownGeneV39.mmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.rnBlastTab.query (via rnBlastTab.query)
      knownGeneV39.scBlastTab.query (via rnBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via rnBlastTab.query)
      mm7.affyGnfU74ADistance.query (via rnBlastTab.query)
      mm7.affyGnfU74ADistance.target (via rnBlastTab.query)
      mm7.affyGnfU74BDistance.query (via rnBlastTab.query)
      mm7.affyGnfU74BDistance.target (via rnBlastTab.query)
      mm7.affyGnfU74CDistance.query (via rnBlastTab.query)
      mm7.affyGnfU74CDistance.target (via rnBlastTab.query)
      mm7.dmBlastTab.query (via rnBlastTab.query)
      mm7.drBlastTab.query (via rnBlastTab.query)
      mm7.dupSpMrna.mrnaID (via rnBlastTab.query)
      mm7.foldUtr3.name (via rnBlastTab.query)
      mm7.foldUtr5.name (via rnBlastTab.query)
      mm7.gnfAtlas2Distance.query (via rnBlastTab.query)
      mm7.gnfAtlas2Distance.target (via rnBlastTab.query)
      mm7.hgBlastTab.query (via rnBlastTab.query)
      mm7.keggPathway.kgID (via rnBlastTab.query)
      mm7.kgAlias.kgID (via rnBlastTab.query)
      mm7.kgProtAlias.kgID (via rnBlastTab.query)
      mm7.kgSpAlias.kgID (via rnBlastTab.query)
      mm7.kgXref.kgID (via rnBlastTab.query)
      mm7.knownBlastTab.query (via rnBlastTab.query)
      mm7.knownBlastTab.target (via rnBlastTab.query)
      mm7.knownCanonical.transcript (via rnBlastTab.query)
      mm7.knownGene.name (via rnBlastTab.query)
      mm7.knownGeneLink.name (via rnBlastTab.query)
      mm7.knownGeneMrna.name (via rnBlastTab.query)
      mm7.knownGenePep.name (via rnBlastTab.query)
      mm7.knownIsoforms.transcript (via rnBlastTab.query)
      mm7.knownToAllenBrain.name (via rnBlastTab.query)
      mm7.knownToEnsembl.name (via rnBlastTab.query)
      mm7.knownToGnfAtlas2.name (via rnBlastTab.query)
      mm7.knownToKeggEntrez.name (via rnBlastTab.query)
      mm7.knownToLocusLink.name (via rnBlastTab.query)
      mm7.knownToPfam.name (via rnBlastTab.query)
      mm7.knownToRefSeq.name (via rnBlastTab.query)
      mm7.knownToVisiGene.name (via rnBlastTab.query)
      mm7.scBlastTab.query (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB003147AB00310490.37623532062206170943
AB004048U0829065.22461110410460.00001142.74
AB005662AB11821797.061022117127201027.6e-44174.9
AB005909U32681753681035781140.00000000001462.39
AB007811AF29764898.9456751356965730973.4
AB008175X5654692.874354204091235570748.4
AB008937AF17868994.09474261047204740807.4
AB010088AB01782093.8151728133546335500921.4
AB011499AF02077794.7944920944090301676.4
AB011812AF21962991.426993410699067301296.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.