Schema for scBlastTab
  Database: mm7    Primary Table: scBlastTab    Row Count: 13,347   Data last updated: 2005-11-15
Format description: Blast alignments of S. cerevisiae genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001539varchar(255) values Name of sequence in this assembly (query)
target YMR131Cvarchar(255) values Name of sequence in other assembly (target)
identity 37.27float range Percent identity
aliLength 322int(10) unsigned range Length of alignment
mismatch 179int(10) unsigned range Number of mismatches
gapOpen 11int(10) unsigned range Number of gap openings
qStart 34int(10) unsigned range Start in query (0 based)
qEnd 342int(10) unsigned range End in query (non-inclusive)
tStart 198int(10) unsigned range Start in target (0 based)
tEnd 511int(10) unsigned range End in target (non-inclusive)
eValue 3.7e-50double range Expectation value
bitScore 193.4double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via scBlastTab.query)
      knownGeneV39.ceBlastTab.query (via scBlastTab.query)
      knownGeneV39.dmBlastTab.query (via scBlastTab.query)
      knownGeneV39.drBlastTab.query (via scBlastTab.query)
      knownGeneV39.foldUtr3.name (via scBlastTab.query)
      knownGeneV39.foldUtr5.name (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via scBlastTab.query)
      knownGeneV39.kgAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgColor.kgID (via scBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via scBlastTab.query)
      knownGeneV39.kgXref.kgID (via scBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via scBlastTab.query)
      knownGeneV39.knownBlastTab.query (via scBlastTab.query)
      knownGeneV39.knownBlastTab.target (via scBlastTab.query)
      knownGeneV39.knownCanonical.protein (via scBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via scBlastTab.query)
      knownGeneV39.knownCds.name (via scBlastTab.query)
      knownGeneV39.knownGene.name (via scBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via scBlastTab.query)
      knownGeneV39.knownGenePep.name (via scBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via scBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via scBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via scBlastTab.query)
      knownGeneV39.knownToHprd.name (via scBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via scBlastTab.query)
      knownGeneV39.knownToMrna.name (via scBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via scBlastTab.query)
      knownGeneV39.knownToMupit.name (via scBlastTab.query)
      knownGeneV39.knownToPfam.name (via scBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via scBlastTab.query)
      knownGeneV39.knownToSuper.gene (via scBlastTab.query)
      knownGeneV39.knownToTag.name (via scBlastTab.query)
      knownGeneV39.knownToU133.name (via scBlastTab.query)
      knownGeneV39.knownToU95.name (via scBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via scBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via scBlastTab.query)
      knownGeneV39.mmBlastTab.query (via scBlastTab.query)
      knownGeneV39.rnBlastTab.query (via scBlastTab.query)
      knownGeneV39.scBlastTab.query (via scBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via scBlastTab.query)
      mm7.affyGnfU74ADistance.query (via scBlastTab.query)
      mm7.affyGnfU74ADistance.target (via scBlastTab.query)
      mm7.affyGnfU74BDistance.query (via scBlastTab.query)
      mm7.affyGnfU74BDistance.target (via scBlastTab.query)
      mm7.affyGnfU74CDistance.query (via scBlastTab.query)
      mm7.affyGnfU74CDistance.target (via scBlastTab.query)
      mm7.dmBlastTab.query (via scBlastTab.query)
      mm7.drBlastTab.query (via scBlastTab.query)
      mm7.dupSpMrna.mrnaID (via scBlastTab.query)
      mm7.foldUtr3.name (via scBlastTab.query)
      mm7.foldUtr5.name (via scBlastTab.query)
      mm7.gnfAtlas2Distance.query (via scBlastTab.query)
      mm7.gnfAtlas2Distance.target (via scBlastTab.query)
      mm7.hgBlastTab.query (via scBlastTab.query)
      mm7.keggPathway.kgID (via scBlastTab.query)
      mm7.kgAlias.kgID (via scBlastTab.query)
      mm7.kgProtAlias.kgID (via scBlastTab.query)
      mm7.kgSpAlias.kgID (via scBlastTab.query)
      mm7.kgXref.kgID (via scBlastTab.query)
      mm7.knownBlastTab.query (via scBlastTab.query)
      mm7.knownBlastTab.target (via scBlastTab.query)
      mm7.knownCanonical.transcript (via scBlastTab.query)
      mm7.knownGene.name (via scBlastTab.query)
      mm7.knownGeneLink.name (via scBlastTab.query)
      mm7.knownGeneMrna.name (via scBlastTab.query)
      mm7.knownGenePep.name (via scBlastTab.query)
      mm7.knownIsoforms.transcript (via scBlastTab.query)
      mm7.knownToAllenBrain.name (via scBlastTab.query)
      mm7.knownToEnsembl.name (via scBlastTab.query)
      mm7.knownToGnfAtlas2.name (via scBlastTab.query)
      mm7.knownToKeggEntrez.name (via scBlastTab.query)
      mm7.knownToLocusLink.name (via scBlastTab.query)
      mm7.knownToPfam.name (via scBlastTab.query)
      mm7.knownToRefSeq.name (via scBlastTab.query)
      mm7.knownToVisiGene.name (via scBlastTab.query)
      mm7.rnBlastTab.query (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539YMR131C37.2732217911343421985113.7e-50193.4
AB001926YPL106C35.9167437598679306501e-119425.6
AB003147YDL058W20260170484324101912610.00000006154.3
AB003503YDR172W56.5742618221695922576839e-138485.3
AB005654YJL128C40.362801587363103496267.3e-50192.6
AB005662YDL058W21.464943271563505106015450.000000000001370.86
AB006034YHR007C27.3121613733004962975130.0000000000007770.09
AB006329YKL032C38.46523203984503614130.0000001552.76
AB006330YKL032C33.8714411662373454130.0000002751.22
AB008175YMR046C24.1414599420734721410.00636.96

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.