Schema for rnBlastTab
  Database: mm8    Primary Table: rnBlastTab    Row Count: 11,163   Data last updated: 2007-02-12
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001750varchar(255) values Name of sequence in this assembly (query)
target NM_019124varchar(255) values Name of sequence in other assembly (target)
identity 98.72float range Percent identity
aliLength 862int(10) unsigned range Length of alignment
mismatch 11int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 862int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 862int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1578double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via rnBlastTab.query)
      knownGeneV39.ceBlastTab.query (via rnBlastTab.query)
      knownGeneV39.dmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.drBlastTab.query (via rnBlastTab.query)
      knownGeneV39.foldUtr3.name (via rnBlastTab.query)
      knownGeneV39.foldUtr5.name (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via rnBlastTab.query)
      knownGeneV39.kgAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgColor.kgID (via rnBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via rnBlastTab.query)
      knownGeneV39.kgXref.kgID (via rnBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.query (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.target (via rnBlastTab.query)
      knownGeneV39.knownCanonical.protein (via rnBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via rnBlastTab.query)
      knownGeneV39.knownCds.name (via rnBlastTab.query)
      knownGeneV39.knownGene.name (via rnBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via rnBlastTab.query)
      knownGeneV39.knownGenePep.name (via rnBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via rnBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via rnBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via rnBlastTab.query)
      knownGeneV39.knownToHprd.name (via rnBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via rnBlastTab.query)
      knownGeneV39.knownToMrna.name (via rnBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via rnBlastTab.query)
      knownGeneV39.knownToMupit.name (via rnBlastTab.query)
      knownGeneV39.knownToPfam.name (via rnBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via rnBlastTab.query)
      knownGeneV39.knownToSuper.gene (via rnBlastTab.query)
      knownGeneV39.knownToTag.name (via rnBlastTab.query)
      knownGeneV39.knownToU133.name (via rnBlastTab.query)
      knownGeneV39.knownToU95.name (via rnBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via rnBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via rnBlastTab.query)
      knownGeneV39.mmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.rnBlastTab.query (via rnBlastTab.query)
      knownGeneV39.scBlastTab.query (via rnBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via rnBlastTab.query)
      mm8.affyGnfU74ADistance.query (via rnBlastTab.query)
      mm8.affyGnfU74ADistance.target (via rnBlastTab.query)
      mm8.affyGnfU74BDistance.query (via rnBlastTab.query)
      mm8.affyGnfU74BDistance.target (via rnBlastTab.query)
      mm8.affyGnfU74CDistance.query (via rnBlastTab.query)
      mm8.affyGnfU74CDistance.target (via rnBlastTab.query)
      mm8.ccdsKgMap.geneId (via rnBlastTab.query)
      mm8.ceBlastTab.query (via rnBlastTab.query)
      mm8.dmBlastTab.query (via rnBlastTab.query)
      mm8.drBlastTab.query (via rnBlastTab.query)
      mm8.dupSpMrna.mrnaID (via rnBlastTab.query)
      mm8.foldUtr3.name (via rnBlastTab.query)
      mm8.foldUtr5.name (via rnBlastTab.query)
      mm8.gnfAtlas2Distance.query (via rnBlastTab.query)
      mm8.gnfAtlas2Distance.target (via rnBlastTab.query)
      mm8.hgBlastTab.query (via rnBlastTab.query)
      mm8.keggPathway.kgID (via rnBlastTab.query)
      mm8.kgAlias.kgID (via rnBlastTab.query)
      mm8.kgProtAlias.kgID (via rnBlastTab.query)
      mm8.kgSpAlias.kgID (via rnBlastTab.query)
      mm8.kgTargetAli.qName (via rnBlastTab.query)
      mm8.kgXref.kgID (via rnBlastTab.query)
      mm8.knownBlastTab.query (via rnBlastTab.query)
      mm8.knownBlastTab.target (via rnBlastTab.query)
      mm8.knownCanonical.transcript (via rnBlastTab.query)
      mm8.knownGene.name (via rnBlastTab.query)
      mm8.knownGeneMrna.name (via rnBlastTab.query)
      mm8.knownGenePep.name (via rnBlastTab.query)
      mm8.knownIsoforms.transcript (via rnBlastTab.query)
      mm8.knownToAllenBrain.name (via rnBlastTab.query)
      mm8.knownToEnsembl.name (via rnBlastTab.query)
      mm8.knownToGnfAtlas2.name (via rnBlastTab.query)
      mm8.knownToKeggEntrez.name (via rnBlastTab.query)
      mm8.knownToLocusLink.name (via rnBlastTab.query)
      mm8.knownToPfam.name (via rnBlastTab.query)
      mm8.knownToRefSeq.name (via rnBlastTab.query)
      mm8.knownToSuper.gene (via rnBlastTab.query)
      mm8.knownToVisiGene.name (via rnBlastTab.query)
      mm8.scBlastTab.query (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001750NM_01912498.728621100862086201578
AB004048NM_05360198.6172109819816e-38150
AB005654NM_00102542595.6243431043404180782
AB007811NM_01721598.9456751356965730971
AB008175NM_01266981.7617031001701172876e-79288
AB008937NM_05340894.09474261047204740803
AB011499NM_01308194.7944920944090301679
AB011812BC0765059040400406336735e-1677.4
AB012601NM_02436297.47633820632062601219
AB012602NM_02436298.6915320015301531e-83304

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.