Schema for scBlastTab
  Database: mm8    Primary Table: scBlastTab    Row Count: 13,887   Data last updated: 2006-03-13
Format description: Blast alignments of S. cerevisiae genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001539varchar(255) values Name of sequence in this assembly (query)
target YMR131Cvarchar(255) values Name of sequence in other assembly (target)
identity 35.38float range Percent identity
aliLength 455int(10) unsigned range Length of alignment
mismatch 265int(10) unsigned range Number of mismatches
gapOpen 13int(10) unsigned range Number of gap openings
qStart 6int(10) unsigned range Start in query (0 based)
qEnd 446int(10) unsigned range End in query (non-inclusive)
tStart 70int(10) unsigned range Start in target (0 based)
tEnd 511int(10) unsigned range End in target (non-inclusive)
eValue 3.9999999999999997e-63double range Expectation value
bitScore 236double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via scBlastTab.query)
      knownGeneV39.ceBlastTab.query (via scBlastTab.query)
      knownGeneV39.dmBlastTab.query (via scBlastTab.query)
      knownGeneV39.drBlastTab.query (via scBlastTab.query)
      knownGeneV39.foldUtr3.name (via scBlastTab.query)
      knownGeneV39.foldUtr5.name (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via scBlastTab.query)
      knownGeneV39.kgAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgColor.kgID (via scBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via scBlastTab.query)
      knownGeneV39.kgXref.kgID (via scBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via scBlastTab.query)
      knownGeneV39.knownBlastTab.query (via scBlastTab.query)
      knownGeneV39.knownBlastTab.target (via scBlastTab.query)
      knownGeneV39.knownCanonical.protein (via scBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via scBlastTab.query)
      knownGeneV39.knownCds.name (via scBlastTab.query)
      knownGeneV39.knownGene.name (via scBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via scBlastTab.query)
      knownGeneV39.knownGenePep.name (via scBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via scBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via scBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via scBlastTab.query)
      knownGeneV39.knownToHprd.name (via scBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via scBlastTab.query)
      knownGeneV39.knownToMrna.name (via scBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via scBlastTab.query)
      knownGeneV39.knownToMupit.name (via scBlastTab.query)
      knownGeneV39.knownToPfam.name (via scBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via scBlastTab.query)
      knownGeneV39.knownToSuper.gene (via scBlastTab.query)
      knownGeneV39.knownToTag.name (via scBlastTab.query)
      knownGeneV39.knownToU133.name (via scBlastTab.query)
      knownGeneV39.knownToU95.name (via scBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via scBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via scBlastTab.query)
      knownGeneV39.mmBlastTab.query (via scBlastTab.query)
      knownGeneV39.rnBlastTab.query (via scBlastTab.query)
      knownGeneV39.scBlastTab.query (via scBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via scBlastTab.query)
      mm8.affyGnfU74ADistance.query (via scBlastTab.query)
      mm8.affyGnfU74ADistance.target (via scBlastTab.query)
      mm8.affyGnfU74BDistance.query (via scBlastTab.query)
      mm8.affyGnfU74BDistance.target (via scBlastTab.query)
      mm8.affyGnfU74CDistance.query (via scBlastTab.query)
      mm8.affyGnfU74CDistance.target (via scBlastTab.query)
      mm8.ccdsKgMap.geneId (via scBlastTab.query)
      mm8.ceBlastTab.query (via scBlastTab.query)
      mm8.dmBlastTab.query (via scBlastTab.query)
      mm8.drBlastTab.query (via scBlastTab.query)
      mm8.dupSpMrna.mrnaID (via scBlastTab.query)
      mm8.foldUtr3.name (via scBlastTab.query)
      mm8.foldUtr5.name (via scBlastTab.query)
      mm8.gnfAtlas2Distance.query (via scBlastTab.query)
      mm8.gnfAtlas2Distance.target (via scBlastTab.query)
      mm8.hgBlastTab.query (via scBlastTab.query)
      mm8.keggPathway.kgID (via scBlastTab.query)
      mm8.kgAlias.kgID (via scBlastTab.query)
      mm8.kgProtAlias.kgID (via scBlastTab.query)
      mm8.kgSpAlias.kgID (via scBlastTab.query)
      mm8.kgTargetAli.qName (via scBlastTab.query)
      mm8.kgXref.kgID (via scBlastTab.query)
      mm8.knownBlastTab.query (via scBlastTab.query)
      mm8.knownBlastTab.target (via scBlastTab.query)
      mm8.knownCanonical.transcript (via scBlastTab.query)
      mm8.knownGene.name (via scBlastTab.query)
      mm8.knownGeneMrna.name (via scBlastTab.query)
      mm8.knownGenePep.name (via scBlastTab.query)
      mm8.knownIsoforms.transcript (via scBlastTab.query)
      mm8.knownToAllenBrain.name (via scBlastTab.query)
      mm8.knownToEnsembl.name (via scBlastTab.query)
      mm8.knownToGnfAtlas2.name (via scBlastTab.query)
      mm8.knownToKeggEntrez.name (via scBlastTab.query)
      mm8.knownToLocusLink.name (via scBlastTab.query)
      mm8.knownToPfam.name (via scBlastTab.query)
      mm8.knownToRefSeq.name (via scBlastTab.query)
      mm8.knownToSuper.gene (via scBlastTab.query)
      mm8.knownToVisiGene.name (via scBlastTab.query)
      mm8.rnBlastTab.query (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539YMR131C35.38455265136446705113.9999999999999997e-63236
AB001750YDL058W20.81884593283685877816172e-1993.2
AB001926YBR169C35.1612873131215596875e-1782.4
AB003147YDL058W20260170484324101912610.0000000654.3
AB003503YDR172W56.5742618221695922576831e-137484
AB005654YJL128C38.9129317071254123496391.0000000000000001e-49192
AB006034YHR007C27.3121613733004962975130.000000000000870.1
AB006329YKL032C38.46523203984503614130.000000252.8
AB006330YKL032C33.8714411662373454130.000000351.2
AB007407YJL056C37.651709856257897118791e-27119

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.