Schema for hgBlastTab
  Database: mm9    Primary Table: hgBlastTab    Row Count: 47,124   Data last updated: 2012-01-30
Format description: Blast alignments of Human genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc007aeu.1varchar(255) values Name of sequence in this assembly (query)
target uc003xsf.3varchar(255) values Name of sequence in other assembly (target)
identity 93.85float range Percent identity
aliLength 650int(10) unsigned range Length of alignment
mismatch 37int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 647int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 650int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1065double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via hgBlastTab.query)
      knownGeneV39.ceBlastTab.query (via hgBlastTab.query)
      knownGeneV39.dmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.drBlastTab.query (via hgBlastTab.query)
      knownGeneV39.foldUtr3.name (via hgBlastTab.query)
      knownGeneV39.foldUtr5.name (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via hgBlastTab.query)
      knownGeneV39.kgAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgColor.kgID (via hgBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via hgBlastTab.query)
      knownGeneV39.kgXref.kgID (via hgBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.query (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.target (via hgBlastTab.query)
      knownGeneV39.knownCanonical.protein (via hgBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via hgBlastTab.query)
      knownGeneV39.knownCds.name (via hgBlastTab.query)
      knownGeneV39.knownGene.name (via hgBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via hgBlastTab.query)
      knownGeneV39.knownGenePep.name (via hgBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via hgBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via hgBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via hgBlastTab.query)
      knownGeneV39.knownToHprd.name (via hgBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via hgBlastTab.query)
      knownGeneV39.knownToMrna.name (via hgBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via hgBlastTab.query)
      knownGeneV39.knownToMupit.name (via hgBlastTab.query)
      knownGeneV39.knownToPfam.name (via hgBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via hgBlastTab.query)
      knownGeneV39.knownToSuper.gene (via hgBlastTab.query)
      knownGeneV39.knownToTag.name (via hgBlastTab.query)
      knownGeneV39.knownToU133.name (via hgBlastTab.query)
      knownGeneV39.knownToU95.name (via hgBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via hgBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via hgBlastTab.query)
      knownGeneV39.mmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.rnBlastTab.query (via hgBlastTab.query)
      knownGeneV39.scBlastTab.query (via hgBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via hgBlastTab.query)
      mm9.affyGnfU74ADistance.query (via hgBlastTab.query)
      mm9.affyGnfU74ADistance.target (via hgBlastTab.query)
      mm9.affyGnfU74BDistance.query (via hgBlastTab.query)
      mm9.affyGnfU74BDistance.target (via hgBlastTab.query)
      mm9.affyGnfU74CDistance.query (via hgBlastTab.query)
      mm9.affyGnfU74CDistance.target (via hgBlastTab.query)
      mm9.bioCycPathway.kgID (via hgBlastTab.query)
      mm9.ccdsKgMap.geneId (via hgBlastTab.query)
      mm9.ceBlastTab.query (via hgBlastTab.query)
      mm9.dmBlastTab.query (via hgBlastTab.query)
      mm9.drBlastTab.query (via hgBlastTab.query)
      mm9.foldUtr3.name (via hgBlastTab.query)
      mm9.foldUtr5.name (via hgBlastTab.query)
      mm9.gnfAtlas2Distance.query (via hgBlastTab.query)
      mm9.gnfAtlas2Distance.target (via hgBlastTab.query)
      mm9.keggPathway.kgID (via hgBlastTab.query)
      mm9.kgAlias.kgID (via hgBlastTab.query)
      mm9.kgColor.kgID (via hgBlastTab.query)
      mm9.kgProtAlias.kgID (via hgBlastTab.query)
      mm9.kgProtMap2.qName (via hgBlastTab.query)
      mm9.kgSpAlias.kgID (via hgBlastTab.query)
      mm9.kgTargetAli.qName (via hgBlastTab.query)
      mm9.kgTxInfo.name (via hgBlastTab.query)
      mm9.kgXref.kgID (via hgBlastTab.query)
      mm9.knownBlastTab.query (via hgBlastTab.query)
      mm9.knownBlastTab.target (via hgBlastTab.query)
      mm9.knownCanonical.protein (via hgBlastTab.query)
      mm9.knownCanonical.transcript (via hgBlastTab.query)
      mm9.knownGene.name (via hgBlastTab.query)
      mm9.knownGeneMrna.name (via hgBlastTab.query)
      mm9.knownGenePep.name (via hgBlastTab.query)
      mm9.knownIsoforms.transcript (via hgBlastTab.query)
      mm9.knownToAllenBrain.name (via hgBlastTab.query)
      mm9.knownToEnsembl.name (via hgBlastTab.query)
      mm9.knownToGnfAtlas2.name (via hgBlastTab.query)
      mm9.knownToKeggEntrez.name (via hgBlastTab.query)
      mm9.knownToLocusLink.name (via hgBlastTab.query)
      mm9.knownToPfam.name (via hgBlastTab.query)
      mm9.knownToRefSeq.name (via hgBlastTab.query)
      mm9.knownToSuper.gene (via hgBlastTab.query)
      mm9.knownToVisiGene.name (via hgBlastTab.query)
      mm9.rnBlastTab.query (via hgBlastTab.query)
      mm9.scBlastTab.query (via hgBlastTab.query)
      mm9.ucscScop.ucscId (via hgBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc007aeu.1uc003xsf.393.856503720647065001065
uc007aew.1uc011ldy.180.742704721027902665.9999999999999994e-111398
uc007aex.2uc003xsd.160.55215277838020940213902138
uc007aey.1uc003xsb.482.66421642041904149e-170594
uc007aez.1uc003xsb.482.66421642041904149e-170594
uc007afa.1uc003xsb.477.8133862322354834149e-115411
uc007afb.1uc003xsb.478.8429353202911284144e-99358
uc007afc.1uc003xsb.482.66421642041904149e-170594
uc007aff.2uc003xsa.289.86296291029502965e-139491
uc007afd.2uc003xsa.289.67184181018301841e-74276

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.